XLOC_012637 (ttc38)


Basic Information

Item Value
gene id XLOC_012637
gene name ttc38
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 10926197 ~ 10959429 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025279
ATGCACGCTGCTAGTTTCAGAGATTGCAAAGCCTGGCAATCCGACGGTCTGCCACTGTCCACCAGCAGTAACGAGGCCTGTAAACTATATGACGCTATACTGTCTCAGTATGTGACCTGGCGTAATGATGAGACTCTGGGGGGAATAGAAGGCTGTATTACATCCATCAAAGCTGCAGACCCGGACTTTGTGATGGGTCACGTCATCTCCACTGGACTGGAGCTGGTGGGCACTGGAAGCTCTGTCCTTCGGGATGAGAGATTGGCCAGCGCAGTGAGGAGGACCGTGGAGCTGGCGGACACTCAGCAGCTCACATCCAGAGAGAAGAACCATGTGAAAGCCGTCCAGCTCTTCtctaaagggtcagttcaccgaAATCTGACCTTTATGTTCAACGGGTGA
>TCONS_00025280
ATGATCTGTGTTGTGATCATGCGTCATCAGGCCTGGCAATCCGACGGTCTGCCACTGTCCACCAGCAGTAACGAGGCCTGTAAACTATATGACGCTATACTGTCTCAGTATGTGACCTGGCGTAATGATGAGACTCTGGGGGGAATAGAAGGCTGTATTACATCCATCAAAGCTGCAGACCCGGACTTTGTGATGGGTCACGTCATCTCCACTGGACTGGAGCTGGTGGGCACTGGAAGCTCTGTCCTTCGGGATGAGAGATTGGCCAGCGCAGTGAGGAGGACCGTGGAGCTGGCGGACACTCAGCAGCTCACATCCAGAGAGAAGAACCATGTGAAAGCCGTCCAGCTCTTCtctaaaggAGCCCTGCACAAGGCCTGTGAGGTTTGGGAATGTATTCTGGCCGATCACCCCACAGACCTGCTGGCACTGAAGTTTGCCCATGATGGATTTTTCTACCTGGGTGAACAGACTCAGATGAGGGACTCGGTGGCGCGGGTGATGCCCCACTGGAAACCACATATGCCCCTATACAGGCAGATTAAAGGGATGTATTCCTTTGGGCTTCTCGAGACTCGTCTCTATGATGAAGCTGAAAAAATGGCAAAAGAGGCTCTGTCTCTGACCCCGGAGGATGGCTGGAGTGTCCACGCTGTGGCTCATGTCCATGAGATGAAGGCAGAGGTGGACAAGGGCCTGAACTTCATGGCCTCTACAGAGAAAAACTGGATGGTGTGCGACATGTTGGCATGTCATAATTACTGGCACTGGGCTCTGTATCACATTGAGAAGGGGAATTATGAAGCAGCTTTAAAGATTTTTGATGAGCAGGTTTCCCAGCGCTGTGTGAAATCTGGAGCCATGCTGGACATTGTGGACTCTTGTTCGCTGCTCTACAGACTGGAGCTGGAGGGTGTGAGCGTGGGTGAGCGATACCGGGAGCTGCTCCAGGTCACCCAGCCCCATTCAGAGGACCACACATTGCTCTTTAACGACCTGCACTTCCTCATGGTTTCACTGGGCAGCAAAGACACGGGCACCACTCAGCGTCTGCTGGAAAGCCTGCAGGAACTGGCTAAAGATCCAGCAGAGAACCGTCAGCTGCAGATAGCGGAGCGCGTGGGTCTGCCCATGTGTCAGGCTCTGCTGGAGTTTGAGCAGAGGAACTACAGGCAGGCCGTGGAGCTGCTGAAGCCCATCAAACAGAGCTTTGTGGAGATCGGAGGCAGTGACGCGCAGAGAGACGTTTTCAGTCAGCTCCTCATTCACGCCGCCATGAAGTCAGGAGACAAAGAACACCAACAATTGGCCAGATGCATGCTGATGGAGAGAGACGCAGTGCGGCCAAACTCCCCGCTCACAGACCGCCTGATCCAGCGAGCCCACTCCTTACACGCTTAAATCCAGACCCTATTCCCTGTGCGCTAAACAGTCTGTTCTCTGCTGCTTTAATTATAGGCTAACACATTTAACCACAGACATCAGATCAGAGAGCACAGCACAGCCCATGAGTTAGCATTGAAcaacacaataataaaatatctttaagtta
>TCONS_00025281
AGGCCTGGCAATCCGACGGTCTGCCACTGTCCACCAGCAGTAACGAGGCCTGTAAACTATATGACGCTATACTGTCTCAGTATGTGACCTGGCGTAATGATGAGACTCTGGGGGGAATAGAAGGCTGTATTACATCCATCAAAGCTGCAGACCCGGACTTTGTGATGGGTCACGTCATCTCCACTGGACTGGAGCTGGTGGGCACTGGAAGCTCTGTCCTTCGGGATGAGAGATTGGCCAGCGCAGTGAGGAGGACCGTGGAGCTGGCGGACACTCAGCAGCTCACATCCAGAGAGAAGAACCATGTGAAAGCCGTCCAGCTCTTCtctaaaggAGCCCTGCACAAGGCCTGTGAGGTTTGGGAATGTATTCTGGCCGATCACCCCACAGACCTGCTGGCACTGAAGTTTGCCCATGATGGATTTTTCTACCTGGGTGAACAGACTCAGATGAGGGACTCGGTGGCGCGGGTGATGCCCCACTGGAAACCACATATGCCCCTATACAGttATATTAAAGGGATGTATTCCTTTGGGCTTCTCGAGACTCGTCTCTATGATGAAGCTGAAAAAATGGCAAAAGAGGCTCTGTCTCTGACCCCGGAGGATGGCTGGAGTGTCCACGCTGTGGCTCATGTCCATGAGATGAAGGCAGAGGTGGACAAGGGCCTGAACTTCATGGCCTCTACAGAGAAAAACTGGATGGTGTGCGACATGTTGGCATGTCATAATTACTGGCACTGGGCTCTGTATCACATTGAGAAGGGGAATTATGAAGCAGCTTTAAAGATTTTTGATGAGCAGGTTTCCCAGCGCTGTGTGAAATCTGGAGCCATGCTGGACATTGTGGACTCTTGTTCGCTGCTCTACAGACTGGAGCTGGAGGGTGTGAGCGTGGGTGAGCGATACCGGGAGCTGCTCCAGGTCACCCAGCCCCATTCAGAGGACCACACATTGCTCTTTAACGACCTGCACTTCCTCATGGTTTCACTGGGCAGCAAAGACACGGGCACCACTCAGCGTCTGCTGGAAAGCCTGCAGGAACTGGCTAAAGATCCAGCAGAGAACCGTCAGCTGCAGATAGCGGAGCGCGTGGGTCTGCCCATGTGTCAGGCTCTGCTGGAGTTTGAGCAGAGGAACTACAGGCAGGCCGTGGAGCTGCTGAAGCCCATCAAACAGAGCTTTGTGGAGATCGGAGGCAGTGACGCGCAGAGAGACGTTTTCAGTCAGCTCCTCATTCACGCCGCCATGAAGTCAGGAGACAAAGAACACCAACAATTGGCCAGATGCATGCTGATGGAGAGAGACGCAGTGCGGCCAAACTCCCCGCTCACAGACCGCCTGATCCAGCGAGCCCACTCCTTACACGCTTAAATCCAGACCCTATTCCCTGTGCGCTAAACAGTCTGTTCTCTGCTGCTTTAATTATAGGCTAACACATTTAACCACAGACATCAGATCAGAGAGCACAGCACAGCCCATGAGTTAGCATTGAAcaacacaataataaaatatctttaagtta

Function

symbol description
ttc38 Orthologous to human TTC38 (tetratricopeptide repeat domain 38).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-050522-318 Orthologous to human TTC38 (tetratricopeptide repeat domain 38).

Ensembl:

ensembl_id ENSDARG00000042188

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025279 False 402 mRNA 0.53 4 10926197 10931578
TCONS_00025280 False 1552 mRNA 0.53 13 10929661 10959429
TCONS_00025281 True 1524 mRNA 0.52 13 10929689 10959429

Neighbor

gene id symbol gene type direction distance location
XLOC_012636 mical3a coding upstream 4257 10784730 ~ 10921940 (+)
XLOC_012635 NA coding upstream 184034 10713532 ~ 10742163 (+)
XLOC_012634 lepa coding upstream 235832 10689772 ~ 10690365 (+)
XLOC_012633 BX927136.1 coding upstream 255459 10670661 ~ 10670738 (+)
XLOC_012632 NA coding upstream 275884 10649872 ~ 10650313 (+)
XLOC_012638 NA coding downstream 304906 11264335 ~ 11269349 (+)
XLOC_012639 BX936417.1 coding downstream 497784 11457213 ~ 11457330 (+)
XLOC_012640 PRMT8 coding downstream 547132 11506561 ~ 11549906 (+)
XLOC_012641 NA coding downstream 702148 11661577 ~ 11694268 (+)
XLOC_012642 CABZ01026684.1 coding downstream 871476 11830905 ~ 11831020 (+)
XLOC_012631 NA non-coding upstream 289873 10632783 ~ 10636324 (+)
XLOC_012630 NA non-coding upstream 735995 10102941 ~ 10190202 (+)
XLOC_012645 NA non-coding downstream 1070979 12030408 ~ 12033482 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_09293519_09305846 TTC38 coding CI01000013 null 9293133 ~ 9305846 (-)