XLOC_012641


Basic Information

Item Value
gene id XLOC_012641
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 11661577 ~ 11694268 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027062
ttgttACTAACAtcatgagaaagaagcctttagtgcgGTAGAAAATgcacttattttgctcacctggcttttgaagtgaattagcaatttctctcaaacgtttttcatttCCGACCAGGTTGTGGTTCGGatgacacatcaaacagacacgggcACTCCTGCCAAATATACACTAGTTTTTTTCATTcgtttcttgggtccaaatacaCAGAAAAGAAGCCTTTTCTCAAACAAAGCCATGCTCGTTGATATTGTGGTCTCCAACTTCCAACTGGCCTGGATGCTGCTATCTCATTGGCTGTATAGGATGATTCAGCTTTCCATGTGGATCCTCTGCCAGACACATTAGCTTCAATCTGCTGGGATTCTCATCACATGCGTCTTGGCTTTATGATGGCATGCTGCTCATCAGAACCAGCGCTGCTCCGCTGCTGGTTGTAAAAACCTTCATCAAAAGAAGTTTGAGTCGAGAAACATCTCGCATACCTCTGCCGCAGAATCTGTCATGTTGTCAACGACAGCTCAAAGGTTGCCAAAGCCACAATATGCTTCATGATTGATGGGAAGGTTTGATTGATCCTTGTTGAGGAGCGGCCTGCAAAGCTGTCAATCATTTTTCCTACATCAAAAAAGACTAGTTATGAAGTTATTTGGCTGGCAGAAAACAGTTGTTTGCTGTTAACACCCTATGAATGATTCATGTTATCACCAGTTGACAGctatttatttactgtaacttaAGGCAGTAGACATGTTAATTTTAGCCACAAACATTTGCACAAAGATTTAGTgctttaataatttaatgatgCTTGGACTATGACACATGTCTTTATCAATTTGTCAGACAAGCTTACAGAAAAATTTTTTTAGGCCAAAACCCATAATGATTTAGCATTTTAGCATTAGCGGTTACTTGTAGCCAcatttgcataaatatatattactttaaaaactgctGGTTCAGGTAAATCTTTGAAAATGAAAGCTTACAGAAAAGTATTTTGTTAGTAATTATTACTATTTATGTTGTGCAGCAGAAgggatgacttttttttttttaaggccaaAACCCATAATGATTTAGCATTTTAGCATTAGCGGTTCCTTGTAGTCACATTTGCATAAATATATACTGCTTTAAAAACTGCTGGTTCAGGTAAATCTTCGAAAAGGAAAGGTAACAGAAAAAACTATTACTTTTTATAGAGCAGGGCAAAAGGGATGACATATTTTGGGAAGCCAAAACCCTGAAATGATTAAACATTTTATCATTAGCAGTTACTTGCCGCCTTATTTCCATAAATATGTATTGCTTTAAAAACTGTTGGTTCACGTAAATCTTTGAAAATGAAAGCTTACAGAAAAGTTTTCTGTTAGTAATTATTACTATTTACACTGCGCGGCAGTAGGGATGACTTATTTTTTGAGGCCAAAACCCACAATGATTTAGCATTTTAGCGTTAGCGGTTACTTGTAGCCACATTTGCATGaagatgtatttattgttttaaaaactgttgGTTCAGGTTCATCTTCGAAAATGAAAGATAACAgaaaaaattattactttttatagtGCGTGGCAGAAGGGATGACATATTTTGGGAGGCCAAAACCCTGAAATGATTTAACATTTTAGCAATAGCGGTTACTTGTAGCCACATTTGCATGAATATGCATTTATTGGTTTAAAAACTGTTGGTTCAGGcaaatgaaaatttacttttCTTGAAAATAGTGATTGCTAACAAGCCAGTATATGTGCTAACAGGTAAACGGTATAGTCTGTATAATTCGATTTCACAAACTTGTTAATTTTATCTGATGTAGAAATTTATTAACTTAAACACTAacctaaaaaaaacaagaaagggCTAATCCATGTTTATGATAGCAATATTTTAGTTAACATTTAAGCGCATTTTAGGTATTACTAATTCAATTTGGCTTTTTATGGCTTAATAAGCCAAGGCAATGCAagggaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027062 True 1988 lncRNA 0.35 2 11661577 11694268

Neighbor

gene id symbol gene type direction distance location
XLOC_012640 PRMT8 coding upstream 111671 11506561 ~ 11549906 (+)
XLOC_012639 BX936417.1 coding upstream 204247 11457213 ~ 11457330 (+)
XLOC_012638 NA coding upstream 392228 11264335 ~ 11269349 (+)
XLOC_012637 ttc38 coding upstream 702148 10926197 ~ 10959429 (+)
XLOC_012636 mical3a coding upstream 739637 10784730 ~ 10921940 (+)
XLOC_012642 CABZ01026684.1 coding downstream 136637 11830905 ~ 11831020 (+)
XLOC_012643 tmtc2b coding downstream 164129 11858397 ~ 11909472 (+)
XLOC_012644 si:dkeyp-2c8.3 coding downstream 276719 11970987 ~ 11973259 (+)
XLOC_012645 NA coding downstream 336140 12030408 ~ 12033482 (+)
XLOC_012646 bicd1a coding downstream 364135 12058403 ~ 12118907 (+)
XLOC_012635 NA non-coding upstream 919414 10713532 ~ 10742163 (+)
XLOC_012633 BX927136.1 non-coding upstream 990839 10670661 ~ 10670738 (+)
XLOC_012632 NA non-coding upstream 1011264 10649872 ~ 10650313 (+)
XLOC_012648 NA non-coding downstream 666211 12360479 ~ 12362826 (+)
XLOC_012649 NA non-coding downstream 757886 12452154 ~ 12462510 (+)
XLOC_012650 NA non-coding downstream 886181 12580449 ~ 12654645 (+)

Expression


Co-expression Network