G420969


Basic Information

Item Value
gene id G420969
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5824182 ~ 5828278 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483497
CGATAACATGTTTTGAGTGAACAAAATTTATTAACATTTCTACACAATACGTTAGGATAACAGCGCAACCACTGGCACACTGTCTCTGGTCAGGAGCATGGAGAAGGAGAACATGATATTTATAGGACAGCGATTGGCCCTTTTTTTACCAGTTCCAGAAGAACAAGCGGCTGCCATGCTTGGATGGCTGTAGTTCAGCCTCAATTGGAGGGTTAGGCTCAGGTCTTGGTCTTGAATGGTAGGGGTTTTCAGGCACAGGTCGAGAGGTTGCCACCTTTGTCACTTGGACAGATCTCCTAGATCAGGCCTCTCCCAGCCCAGCTTCTCCAACACACAGCTATCAAACTCCTTCTGCTGCTTCCGGCAGTGGCGCAGCTCAGCCAGGTTAGAGTAATCCAAACAGGTCCAGTACTCTGTGAAGGACTCGGCACAGTTTCCCTTTATCTGCCTGTAGGCCAAACAATATGTGATTTTAAAAACTAATTACATGCAAATAGTGGGGTTTACAACATGTCATAACCAGCCACAACACAACGACTCATTTTCTGTCCATGCTAAAAGCATGTGTGAAGCAAACGACAGCCAATCAGAACAGTGAAGGCGAGTCCTCTCTATTTGTGTGCTCTGTTGCACAAGTTATACATGGAAAAGCATAAACGCATACCTTTTATTTTCAT
>TU483498
CGATAACATGTTTTGAGTGAACAAAATTTATTAACATTTCTACACAATACGTTAGGATAACAGCGCAACCACTGGCACACTGTCTCTGGTCAGGAGCATGGAGAAGGAGAACATGATATTTATAGGACAGCGATTGGCCCTTTTTTTACCAGTTCCAGAAGAACAAGCGGCTGCCATGCTTGGATGGCTGTAGTTCAGCCTCAATTGGAGGGTTAGGCTCAGGTCTTGGTCTTGAATGGTAGGGGTTTTCAGGCACAGGTCGAGAGGTTGCCACCTTTGTCACTTTGGACAGATCTCCTAGATCAGGCCTCTCCCAGCCCAGCTTCTCCAACACACAGCTATCAAACTCCTTCTGCTGCTTCCGGCAGTGGCGCAGCTCAGCCAGGTTAGAGTAATCCAAACAGGTCCAGTACTCTGTGAAGGACTCGGCACAGTTTCCCTTTATCTGCCTGAAGAAGTTGACTGCACACTCATTGACTTTTGTCCCTTCTTTCATACATTTTCTGGGGTCCTTCTCCTCCCAGCGGCACAGCATGAACTCTTTGTTGGGCTTGTCACATTGAGAGCCATAGTGATGAGCAGCCGCCTTTAGTACAGCTGATGATACATTGACCTCTTCGACGTTCAGTTCCTGCAACGTCGGAATCTCAACCACACCGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU483497 False 677 lncRNA 0.45 2 5824182 5824958
TU483498 True 661 lncRNA 0.49 4 5824182 5828278

Neighbor

gene id symbol gene type direction distance location
CI01000304_05584729_05612753 STRBP coding upstream 211384 5584729 ~ 5612798 (+)
CI01000304_05541965_05547732 NA coding upstream 276305 5541538 ~ 5547877 (+)
CI01000304_05489571_05504308 NA coding upstream 319558 5489525 ~ 5508080 (+)
CI01000304_05394708_05400373 NA coding upstream 423566 5393852 ~ 5400616 (+)
CI01000304_05277392_05292162 DBH coding upstream 532020 5277101 ~ 5292162 (+)
CI01000304_05828658_05832773 MORN5 coding downstream 380 5828658 ~ 5832803 (+)
CI01000304_05880320_05907760 NA coding downstream 51877 5880155 ~ 5907760 (+)
CI01000304_05931192_05933816 NA coding downstream 102914 5931192 ~ 5933816 (+)
CI01000304_05934136_05935124 NA coding downstream 105858 5934136 ~ 5935787 (+)
CI01000304_05965390_05976384 NA coding downstream 136943 5965221 ~ 5980978 (+)
G421009 NA non-coding upstream 2407 5821194 ~ 5821775 (+)
G421008 NA non-coding upstream 3736 5820050 ~ 5820446 (+)
G421007 NA non-coding upstream 5924 5818028 ~ 5818258 (+)
G421006 NA non-coding upstream 6628 5817219 ~ 5817554 (+)
G421000 NA non-coding upstream 38254 5785704 ~ 5785928 (+)
G421015 NA non-coding downstream 9768 5838046 ~ 5888761 (+)
G420967 NA non-coding downstream 112415 5940693 ~ 5947780 (+)
G421043 NA non-coding downstream 129832 5958110 ~ 5958343 (+)
G421067 NA non-coding downstream 285067 6113345 ~ 6113593 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 647391 5173426 ~ 5176791 (+)
G420445 NA other upstream 1520350 4303336 ~ 4303832 (+)
G418981 NA other upstream 3730504 2092494 ~ 2093678 (+)
G418116 NA other upstream 4948933 872670 ~ 875249 (+)
G418059 NA other upstream 5259731 558092 ~ 564451 (+)
G421162 NA other downstream 412955 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 1524371 7352621 ~ 7354396 (+)
G421435 NA other downstream 1655863 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2150350 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 2403716 8231293 ~ 8235655 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001933 ndufa8 coding NC_007121.7 CM002894.2 9410304 ~ 9419994 (+)