XLOC_012679 (si:dkey-103i16.6)


Basic Information

Item Value
gene id XLOC_012679
gene name si:dkey-103i16.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15271993 ~ 15289997 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025338
GCGGGAACGCTGGACTTGCACAGATTCAAACATGACATCTATCTAGCGTTAGATGTCGCCTACATTTTCCTTTAACTGACGGTTTGCTGTGGTGAGGGATTTCATCGGTGCCCTTTGCTCGTTTTGACGGTCTTCCCTTCATCCCTAGTCGGGTAAACAAATACAGGTGTCGTGATGAGCAAGGCGAGGTTGAGCAGAGACAGAAGAGCGGCATCGGTTGGGGTCTCCAGAGTCACCCGCAGCTCCATGATGAGTCCTCAGGACTGTGAGCGCAGCAGAGCTCCAGACCCCGGCCTGCTGGACGAGCTCAGCCTCATGAGTGTCAGTGAACAGCAGGCCTCAGCCACACGGAAAGGTAGTAGTAAGCCTGCTCTGTCCTCACCCTCTGGACGCTCAGTATCGCGCGGGGCTTTGGAAACCATCGGCAGGCTGATGAAGCTTGGTCGAGTGCGAAACATTGTGGTAGTTGCTGGAGCAGGAATCAGCACAGCCAGCGGGATCCCAGACTtcagGACTCCAGGAACGGGTCTCTACGCAAACCTAGCAAAGTACGACATCCCTTACCCAGAGGCCGTCTTTAACATCGACTACTTTTCTGACAACCCTCATCCCTTCTTCTCACTGGCTAAAGAGCTTTATCCTGGACACCACCGGCCCAACTACGTCCACTACTTCATCCGCATGCTGCATCAGAAAGGCCTGCTGCTCCGCATGTACACCCAGAACATCGACGGTCTCGAAAAACTTTGCGGTATCCCTGATGACAAACTTGTGGAGGCTCATGGGAGTTTTGCCACCGCTGCCTGTCACCTCTGCTATACTCCTTATCCTGCAGAGGAAGCCAAGCAAGCTATAATGAACGGGAGTGTTCCCATCTGCACATTCTGCGCTGGGGCCGTCAAACCTAATGTTGTGTTCTTTGGAGAAGATCTGCCGGAAAAATACTTCCAACATGCTGAAGATTTCCCAAAAGCAGATCTTCTCATAATCATGGGCACTTCTTTAAAGGTTGGTTTAATTGAGCCCTTTGCCAGCTTGATAAACACCGTGAAGTCCACAGTTCCTCGTCTCCTGCTGAACCGTGATGCAGTCGGGCCCTTTGAACGGAGGCCCCTGAGAAGAGCCGACTACATGGAGCTGGGAGATCTGTCCGAATCTGTACGCAAACTGGCAGAGATCCTTGGATGGCACACGGAGATCCAGACCCTGATGAACAGCCATGAGAACGGTCTTTATTCATACATCAGCAGCAGTGGTGAGAACAGCGGAGACTCTGAGACGGACAGCATGCACTAA

Function

symbol description
si:dkey-103i16.6 Predicted to enable NAD+ binding activity and NAD-dependent histone deacetylase activity. Predicted to be active in nucleus.

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0017136 NAD-dependent histone deacetylase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0070403 NAD+ binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061207-46 Predicted to enable NAD+ binding activity and NAD-dependent histone deacetylase activity. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDARG00000062893

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025338 True 1296 mRNA 0.52 7 15271993 15289997

Neighbor

gene id symbol gene type direction distance location
XLOC_012678 si:ch73-62b13.1 coding upstream 83939 15175478 ~ 15188054 (+)
XLOC_012677 zgc:153031 coding upstream 130874 15132112 ~ 15141119 (+)
XLOC_012676 cry1b coding upstream 142297 15106518 ~ 15129696 (+)
XLOC_012675 BX649610.2 coding upstream 275288 14989079 ~ 14996705 (+)
XLOC_012674 uri1 coding upstream 565994 14693682 ~ 14705999 (+)
XLOC_012680 NA coding downstream 142709 15432706 ~ 15440860 (+)
XLOC_012681 NA coding downstream 143467 15433464 ~ 15441472 (+)
XLOC_012682 NA coding downstream 156626 15446623 ~ 15449445 (+)
XLOC_012683 NA coding downstream 159508 15449505 ~ 15452652 (+)
XLOC_012684 NA coding downstream 163918 15453915 ~ 15456747 (+)
XLOC_012665 NA non-coding upstream 1032534 14234369 ~ 14239459 (+)
XLOC_012664 BX649568.1 non-coding upstream 1323069 13948810 ~ 13948924 (+)
XLOC_012662 NA non-coding upstream 1756685 13494240 ~ 13515308 (+)
XLOC_012654 NA non-coding upstream 2112239 13133657 ~ 13159754 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_06836984_06840150 NA coding CI01000013 null 6836984 ~ 6840150 (-)