XLOC_012681


Basic Information

Item Value
gene id XLOC_012681
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15433464 ~ 15441472 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026878
gcagattagaCTGGGGCATGTGGAGATATGGGAATCACACCTCAGGAATGACTGGAAATTGATGGTCAGGAATTTGTTGTAAAATTCAGATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAGTGGTGATTGGCATGGATCGTGGAGAAACAGGGAAACACACGGatgggtgcatggatggatgtccttccaagaggaaggggatggtggtgggcatagattacaGTGAA
>TCONS_00027071
TCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAGTGGTGATTGGCATGGATCGTGGAGAAACAGGGAAACACACGGatgggtgcatggatggatgtccttccaagaggaaggggatggtggtgggcatagattacaGTGAAATATACttgaagacctggagctcagGAAGCAGGTAGAACTGATTGAACAGACTGAACAATGGAGTAAGAGTCCAAAGAAATGTATTAGGAATATTTAAATacttgatatctttctctttggcagattgGTCAAAGGAAACAAGGAAACACACAAATTggtgcatggatggatgtccttccaagaggaagggggtggtggtgggcatagattgttagatgtctTCCCTATGACTAATATTTACATTGTAGGTAATGGAACCACAACAGACAGACTCACAAGCGGAATGGTGAATTTTAATTGAAGAAGACTGGAGAACACTTGGTTTATTGCTGGAGATCAGTCAGTCAAtagagctctgttagtcttgtttttgtcttttgcagattagaCTGTGGCATGTGGAGAAAAGGAAATCACACCTCAGGAATGACTGGAAATTGATGGTCaggaatttgttttaaaaatcagATCAACAGGTGCATGGGTGAACGTCCTTCCAAGATACAAGAATGGTGGTTGGTCTAGATTGTTAAAtaggccttgtctgtgtcaggtttttctttttctggtaaTGGAGATAGAACAGGCAGAAGAGGAGCCGTTAGGGTTTAGTTGgggctgtctttttcttttgcaGGTTGAAGTGGAGCAGAAGGAGAACTCACAAGAGGAAAGGTGGAGACATACttgaagacctggagctcaggaagcagAATGGAATGGAC
>TCONS_00026880
catagattgttagatatCTTCCCTATGGCTAATATTTACATTGTAGGTAATGGAACCACAACAGACAGACTCACAAGCGGAATGattagaCTGTGGCATGTGGAGAAATGGAAATCACACCTCAGGAATGACTGGAAATTGATGGTCaggaatttgttttaaaaatcagATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAATGGTGGTTGGTCTAGATTGTTAAAtaggccttgtctgtgtcaggtttttctttttcagttaaTGGAGAAAGAGCAGAAGAAGGAG
>TCONS_00026882
catagattgttagatatCTTCCCTATGGCTAATATTTACATTGTAGGTAATGGAACCACAACAGACAGACTCACAAGCGGAATGGTGAATATTTATTTGAAGAAGACTGGAGAACACTTGGTTTATTGCTGGAGATCAGTCAGTCAAtagagctctgttagtcttgtttttgtcttttgcagattagaCTGTGGCATGTGGAGAAATGGAAATCACACCTCAGGAATGACTGGAAATTGATGGTCaggaatttgttttaaaaatcagATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAATGGTGGTTGAAGTGGAGCAGAAGGAGAACTCACAAGAGGAAAGGTGGAGACATACTTGAAGATCTGGAGCTCAGGAAGCAGAATGGAATGGACCACATGGAGAAAAAGGGAATCACACACTTCAGCAATGACTGGATggtcagcaatttatttttaaaaatcagactAACGGGTGAATTGATGGATGTCTTACAAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTGGCCatgtctgtgtcaggtttttctttttcagataatGAAGAGGTAGCAGAATAAGGGGACTCACAAGGGAAAAGGTGGAAATACACTTAAAGACCTGGAGCTCAGGAAGCAGGTACAACTGATTGAACAGGCTGAATAATGGAGTTAGTTTCCAAAAAAGTGTATTAAGAATAATTAAATACTTGATATTTTTACCTTTGGCAgattggcatggagcatgtggagaaacaGGGAAACACACGGATGGGTGCATGGGTAGATGTCTCTCCAAGACGAAGAGGGTGgcggtgggcatagattgttcgCTAGATGTATTGTCTGTAGTAGTTACATTGTAGGTAATGGAACCACAACAGAcagaagagggagactcacaagCGGAATGGTGAATATTTGTCTGTTAAACACTAGAGAACAAGAGTTGTGGTTGGTATAAATGGTCAAttaggccttgtctgtgtcaggtttttctttttcagttaaTAGA
>TCONS_00026881
catagattgttagatatCTTCCCTATGGCTAATATTTACATTGTAGGTAATGGAACCACAACAGACAGACTCACAAGCGGAATGtcttgtttttgtcttttgcagattagaCTGTGGCATGTGGAGAAAAGGAAATCACACCTCAGGAATGACTGGAAATTGATGGTTGAAGTGGAGCAGAAGGAGAACTCACAAGAGGAAAGGTGGAGACATACTTGAAGATCTGGAGCTCAGGAAGCAGAATGGAATGGACCACATGGAGAAAAAGGGAATCACACACTTCAGCAATGACTGGATggtcagcaatttatttttaaaaatcagactAACGGGTGAATTGATGGATGTCTTACAAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTGGCCatgtctgtgtcaggtttttctttttcagataatGAAGAGGTAGCAGAATAAGGGGACTCACAAGGGAAAAGGTGGAAATACACTTAAAGACCTGGAGCTCAGGAAGCAGGTACAACTGATTGAACAGGCTGAATAATGGAGTTAGTTTCCAAAAAAGTGTATTAAGAATAATTAAATACTTGATATTTTTACCTTTGGCAgattggcatggagcatgtggagaaacaGGGAAACACACGGATGGGTGCATGGGTAGATGTCTCTCCAAGACGAAGAGGGTGgcggtgggcatagattgttcgCTAGATGTATTGTCTGTAGTAGTTACATTGTAGGTAATGGAACCACAACAGAcagaagagggagactcacaagCGGAATGGTGAATATTTGTCTGTTAAACACTAGAGAACAAGAGTTGTGGTTGGTATAAATGGTCAAttaggccttgtctgtgtcaggtttttctttttcagttaaTAGA
>TCONS_00026885
gcagattagTATGGGGCATGTGGAGAAATGGGAATCACACCTCAGGAATGACTGGAAATTGATGGTCAGGAATTTGTTGTAAAAATCAGATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAGTGGTGATTGGCATGGATCGTGGAGAAACAGGGAAACACACGGatgggtgcatggatggatgtccttccaagaggaaggggatggtggtgggcatagattacaGTGAA
>TCONS_00027073
ATGGGGCATGTGGAGAAATGGGAATCACACCTCAGGAATGACTGGAAATTGATGGTCAGGAATTTGTTGTAAAAATCAGATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAGTGGTGATTGGCATGGATCGTGGAGAAACAGGGAAACACACGGatgggtgcatggatggatgtccttccaagaggaaggggatggtggtgggcatagattacaGTGAAATATACttgaagacctggagctcagGAAGCAGGTAGAACTGATTGAACAGACTGAACAATGGAGTAAGAGTCCAAAGAAATGTATTAGGAATATTTAAATacttgatatctttctctttggcagattgGTCAAAGGAAACAAGGAAACACACAAATTggtgcatggatggatgtccttccaagaggaagggggtggtggtgggcatagattgttagatgtctTCCCTATGACTAATATTTACATTGTAGGTAATGGAACCACAACAGACAGACTCACAAGCGGAATGGTGAATTTTAATTGAAGAAGACTGGAGAACACTTGGTTTATTGCTGGAGATCAGTCAGTCAAtagagctctgttagtcttgtttttgtcttttgcagattagaCTGTGGCATGTGGAGAAAAGGAAATCACACCTCAGGAATGACTGGAAATTGATGGTCaggaatttgttttaaaaatcagATCAACAGGTGCATGGGTGAACGTCCTTCCAAGATACAAGAATGGTGGTTGAAGTGGAGCAGAAGGAGAACTCACAAGAGGAAAGGTGGAGACATACTTGAAGATCTGGAGCTCAGGAAGCAGAATGGAATGGACCACATGGAGAAAAAGGGAATCACACACTTCAGCAATGACTGGATggtcagcaatttatttttaaaaatcagactAACGGGTGAATTGATGGATGTCTTACAAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTGGCCatgtctgtgtcaggtttttctttttcagataatGAAGAGGTAGCAGAATAAGGGGACTCACAAGGGAAAAGGTGGAAATACACTTAAAGACCTGGAGCTCAGGAAGCAGGTACAACTGATTGAACAGGCTGAATAATGGAGTTAGTTTCCAAAAAAGTGTATTAAGAATAATTAAATACTTGATATTTTTACCTTTGGCAgattggcatggagcatgtggagaaacaGGGAAACACACGGATGGGTGCATGGGTAGATGTCTCTCCAAGACGAAGAGGGTGgcggtgggcatagattgttcgCTAGATGTATTGTCTGTAGTAGTTACATTGTAGGTAATGGAACCACAACAGAcagaagagggagactcacaagCGGAATGGTGAATATTTGTCTGTTAAACACTAGAGAACAAGAGTTGTGGTTGGTATAAATGGTCAAttaggccttgtctgtgtcaggtttttctttttcagttaaTAGAGAGAGCAGAAGAAGGAGATTCACAAGGGGAACGGTAGAGATATACTTGAAAACCTGGAGCTCAGGAAGCAGGTAGAACTGATTGAACAGACTGAACAATAGAGTTAGAGTCCAAAGAAATGTATTAGGAATATTTAAATGcttgatatctttctctttggcagattgGCCAAAGAAAAAAGGGAAACACACGAatgggtgcatggatggatgtccttccaagaggaagggggtggtggtgggcatagattgttagatgtcttctctgtggctgttatttacattgtagGTAATGGAACCACAACAGATagaagagggagactcacaagCGGAATGGTGAATATTTGTCTGTTAAACACTAGAGAACAAGAGTTGTCATTGGTATAAATGGTCATTTAGGCCTTGTCTTtgtcaggtttttctttttcagttaaTGAAGAGAGAGCAGAAGAAGGAGATTCACAAGGGGAACGGTAGATATATACTTAAAGACCTGAAGCTCAGGAAGCAGGTAGAACTGATTGAACAGACTGAACAATGGAGTTAGAGTCCAAACAAATGTATTAGGAATATTTAAATacttgatatctttctctttggcagattgGTCAAAGGAAACAAGGAAACACACAAATTggtgcatggatggatgtccttccaagaggaagggggtggtggtgggcatagattgttagatgtcttctctgtggctgttatttacattgtagGTAATGGAACCACAACAGATAGAAAAGGGAGACTCACAAGCGGAATGGTGAATATTTATTTGAAGAAGACTGGAGAACATTTGGTTTATTGTTGGAGATCAGTCAGTCAAtagagctctgttagtcttgtttttgtcttttgcagattagaCTGGGACATGTGGAGAAATTGAAATCACACCTCAGGAATGACTGGAAATTGATGGTCAGGAACTCGTTTTAAAAATCAGATCAACAGGTGCATGGATGAAGGTCCTTCCAAGATACAAGAGTGGTGGTTGGTATAGATTGTTAAAtaggccttgtctgtgtcaggtttttctttttcaggtaatggagaTAGAGCAGGCAGAAGAGGAGCCGGTAGGGTTTAGTTGgggctgtctttttcttttgcaGGTTGAAGTGGATCAGAAGGAGAACTCACAAGGGGGGAAAGGTGGAGACATACTTGAAGACATGGAGCTCAGGAAGCAGATTGGAATGGACCACATGGAGAAAaagggaatcacacacctcagcaatgactggatggtcagtattttatttttaaaaatcagattaaCGGGTGAATTGAT

Function

GO:

id name namespace
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026878 False 238 lncRNA 0.47 2 15433464 15437197
TCONS_00027071 False 874 lncRNA 0.43 4 15433554 15441472
TCONS_00026880 False 296 lncRNA 0.39 2 15434119 15434512
TCONS_00026882 False 1029 lncRNA 0.40 3 15434119 15438650
TCONS_00026881 False 880 lncRNA 0.41 4 15434119 15438650
TCONS_00026885 False 238 lncRNA 0.47 2 15436734 15437197
TCONS_00027073 True 2764 lncRNA 0.41 5 15436744 15440053

Neighbor

gene id symbol gene type direction distance location
XLOC_012679 si:dkey-103i16.6 coding upstream 143467 15271993 ~ 15289997 (+)
XLOC_012678 si:ch73-62b13.1 coding upstream 245410 15175478 ~ 15188054 (+)
XLOC_012677 zgc:153031 coding upstream 292345 15132112 ~ 15141119 (+)
XLOC_012676 cry1b coding upstream 303768 15106518 ~ 15129696 (+)
XLOC_012675 BX649610.2 coding upstream 436759 14989079 ~ 14996705 (+)
XLOC_012682 NA coding downstream 5151 15446623 ~ 15449445 (+)
XLOC_012683 NA coding downstream 8033 15449505 ~ 15452652 (+)
XLOC_012684 NA coding downstream 12443 15453915 ~ 15456747 (+)
XLOC_012685 slc17a8 coding downstream 174695 15616167 ~ 15635407 (+)
XLOC_012686 nr1h4 coding downstream 203087 15644559 ~ 15666942 (+)
XLOC_012665 NA non-coding upstream 1194005 14234369 ~ 14239459 (+)
XLOC_012664 BX649568.1 non-coding upstream 1484540 13948810 ~ 13948924 (+)
XLOC_012662 NA non-coding upstream 1918156 13494240 ~ 13515308 (+)
XLOC_012654 NA non-coding upstream 2273710 13133657 ~ 13159754 (+)
XLOC_012689 CR536616.1 non-coding downstream 270957 15712429 ~ 15712545 (+)
XLOC_012700 NA non-coding downstream 868649 16310121 ~ 16315811 (+)

Expression


Co-expression Network