RNA id: TCONS_00026885


Basic Information

Item Value
RNA id TCONS_00026885
length 238
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_012681
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15433464 ~ 15441472 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gcagattagTATGGGGCATGTGGAGAAATGGGAATCACACCTCAGGAATGACTGGAAATTGATGGTCAGGAATTTGTTGTAAAAATCAGATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAGTGGTGATTGGCATGGATCGTGGAGAAACAGGGAAACACACGGatgggtgcatggatggatgtccttccaagaggaaggggatggtggtgggcatagattacaGTGAA

Function

GO:

id name namespace
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026884 lncRNA upstream 72 15434974 ~ 15436662 (+) False XLOC_012680
TCONS_00026877 lncRNA upstream 621 15432706 ~ 15436113 (+) False XLOC_012680
TCONS_00026883 lncRNA upstream 621 15434974 ~ 15436113 (+) False XLOC_012680
TCONS_00027072 lncRNA upstream 1540 15434633 ~ 15435194 (+) False XLOC_012680
TCONS_00026880 lncRNA upstream 2222 15434119 ~ 15434512 (+) False XLOC_012681
TCONS_00027074 lncRNA downstream 2926 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00027075 lncRNA downstream 9426 15446623 ~ 15449445 (+) True XLOC_012682
TCONS_00027076 lncRNA downstream 12308 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027077 lncRNA downstream 16718 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00025359 lncRNA downstream 696511 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00025338 mRNA upstream 146737 15271993 ~ 15289997 (+) True XLOC_012679
TCONS_00025336 mRNA upstream 248680 15175478 ~ 15188054 (+) False XLOC_012678
TCONS_00025337 mRNA upstream 248680 15182965 ~ 15188054 (+) True XLOC_012678
TCONS_00025335 mRNA upstream 295615 15132112 ~ 15141119 (+) True XLOC_012677
TCONS_00025334 mRNA upstream 307038 15106518 ~ 15129696 (+) True XLOC_012676
TCONS_00025339 mRNA downstream 178970 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025340 mRNA downstream 207362 15644559 ~ 15666942 (+) True XLOC_012686
TCONS_00025341 mRNA downstream 245960 15683157 ~ 15693240 (+) True XLOC_012687
TCONS_00025342 mRNA downstream 268963 15706160 ~ 15718931 (+) True XLOC_012688
TCONS_00025344 mRNA downstream 321178 15758375 ~ 15768336 (+) True XLOC_012690
TCONS_00025333 other upstream 440029 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 787439 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1487810 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3605714 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3979404 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025343 other downstream 275232 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 696487 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 1278754 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 1284602 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1541431 16978628 ~ 16983066 (+) False XLOC_012711

Expression Profile

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