RNA id: TCONS_00025334


Basic Information

Item Value
RNA id TCONS_00025334
length 3019
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_012676
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15106518 ~ 15129696 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ttttgttttgccttcgCATGTTGTTGACGTGCGCGTGCTTTCTCGTCTGTATTTTCCTACGCGTGTGTTATATTAATCCGCCAGTTTTACAGTAACGTGTTATGCgtatattttaaacactaaatttACTTTCACCCTGTTATCGTGTCAGTCAGTCACAGGGTGTGTAAAGCAGCTATATGAATTTTGTGATTCAGCATTCAAGAGCGCAGAGATTCAACTTCAACATGGGACAAGTTTTTCTTGAGCAAGGCTAAATCAAACGCTTCGCCAGATCTTACTTATATCTGATTTTGGGGGGGTTTACGAAGTTTTGGGAGTTGCTGGAGCTCTCGTGATCTCAGAAGGGGCTGCAATACATTTGGAGACATGGTTGTCAATACGGTCCACTGGTTCAGGAAGGGTTTGAGGCTCCATGATAACCCTTCATTGCGGGACTCTATAAAGGGAGCCGATAATCTGAGATGCGTTTACATACTGGACCCCTGGTTTGCCGGATCGTCCAATGTGGGAATCAGCAGATGGAGGTTTTTGCTGCAGTGTCTCGAAGACTTGGATGCCAGCCTTCGCAAACTAAACTCTCGGCTCTTTGTAATCAGAGGACAACCTACAGACGTCTTTCCAAGACTATTCAAGgAGTGGAAAATCAGCCGGCTGTCATACGAGTACGACTCAGAGCCCTTCGGGAAGGATCGTGATGCAGCTATTAGGAAACTAGCCACTGAGGCAGGGGTGGAAGTGTTCGTCAGGATCTCCCACACACTCTATGATCTGGACAAGATCATTGAGTTCAACGGAGGCCAGTCTCCCCTCACCTATAAGCGATTTCAAACACTTATCAGTCGAATGGATCCTGTGGAGATGCCAGCAGAGACAATCACAGCTGAGATTATGGGCAAATGCTCCACACCGGTCAGTGATGATCATGATGACAAGTTTGGTGTACCGTCTCTGGAGGAGCTCGGTTTTGAAACAGAGGGACTGTCCACTGCTGTGTGGCCCGGGGGAGAGACTGAAGCTCTGACTCGATTAGAGAGACACCTGGAGAGGAAGGCTTGGGTGGCTAATTTTGAACGCCCCAGAATGAACGCTAATTCTTTGCTGGCCAGTCCCACAGGCCTGAGCCCTTACCTGCGGTTTGGCTGCCTCTCCTGTAGACTTTTCTATTTCAAACTAACAGACCTCTACAGGAAGGTAAAGAAGAACAGCACCCCGTCTCTGTCTCTTTATGGCCAGCTGCTGTGGCGCGAGTTCTTCTACACAGCTGCGACTAACAACCCACATTTTGACAAAATGGAGTTCAATCCCATCTGCGTGCAGATTCCATGGGACAGGAACCCAGAGGCTCTGGCCAAGTGGGCCGAAGGTCAGACCGGTTTCCCGTGGATTGATGCAATAATGACCCAGTTGAGGCAGGAGGGATGGATCCACCATCTGGCCAGGCATGCAGTTGCTTGCTTCCTCACACGTGGAGACCTGTGGATCAGCTGGGAAGAGGGCATGAAGGTGTTTGAGGAGTTGTTGCTGGATGCAGACTGGAGCGTCAATGCAGGAAGCTGGATGTGGCTTTCGTGCAGCTCATTCTTCCAGCAGTTCTTTCACTGTTACTGTCCAGTGGGCTTCGGTCGACGTACTGACCCTAATGGAGACTATATAAGacgCTATTTGCCCATACTGAGGGGCTTCCCTGCCAAATTCATCTATGACCCTTGGAATGCCCCAGAAAGTGTTCAGAAGGTCGCCAAGTGCATAATTGGAGTGCACTACCCCAAACCAATGGTTAATCACGCTGAGGCTAGCAGGATAAACATTGAGCGAATGAAGCAGATTTACCAGCAACTCTCCTGCTACCGGGGCCTTGGGCTCCTTGCAACTGTTCCATCAAACACAGCCAACAATGAAGATAGTAATGGAGCAGGTCCTTCCTCGGGAGACACACAGGAGAGAACTCACATTACAGTGCACACCTTACCAGCAAGTTCTCAATCAGAGTTTCCAGCATTTGCAGTGTCATGTGGTCAACAGCTTGTCAACAGTGTGCAGCCACAGCCAGGTTACTCAGGTGCTGGCATGGTTGGACAAGCTCACAAACAGACACAGAGAGTAAGAGGAATGACTGCTTTTAAGCGACATGGTGAAGACCGAACAACAGATTTTCCATCAAAGATTCAGAGAAATGACTGCAATTAACCAAGGAAGCAAGAATAAACACACAAACCTTTCCTCAGACTAGTGATGAGACCAAATCTGAACAAAGGACATCTCTGCATGGCTAATCCACTTCTCCATGCTTCGCTGTGCCCTTTATGCTTTGCCATCGTGTCATTCTGCTTGTTTAGCTTGAGTTAGCATCAAGGTCAAGCGTGGTGGACCAGGAAACTGTAAACCAAGCCAGTTGATGTGACACAATCTACGTAACTACAGCATTTTATCATGTAAGCTGTTTGTTGATGAGGAAAACGCTTTGTCGTATTATTCACACAATCCACAACTTGTATGTCATTTCTCTTTGTGGCCGTATGTGTCTAGCATACCATTTAATGTCTATTATGTGcattgttttgccttttattttggCAGTAATTGTGTTTTAAACAATTCTATAAAATAAAAGAGGGATTTATGGAGAAATTCACATCTTAATAGTGATAAGCAAGACTTTATCAGCCATTAATTCAAACCTTTAGTAGCactttgattaattaaataatttgaagttcaatattaatttatagagaaacgcattaaaatttaaaaactaaaattccaGAGCAAGAAACGTTAtatttagagtttttgttttgctttttataagCGAGTAATTTTATCATTGAGGCCTGTGGCTCTTATAAGCACAATTGGATTTGTTTCAAGGTCTACTATGTATATATTAATGCTTATATTGTAAGTAATACAGTTGGCAAACCATTGTACataacttctttttttcttgctcATTTACAGACTTGccattgtatattttttatacgagagataatacattttttgattgccGTAA

Function

GO:

id name namespace
GO:0032922 circadian regulation of gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0071949 FAD binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010426-3 Predicted to enable DNA binding activity and FAD binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated. Located in nucleus. Is expressed in brain; eye; inner ear; liver; and ovary. Human ortholog(s) of this gene implicated in advanced sleep phase syndrome. Orthologous to human CRY1 (cryptochrome circadian regulator 1).

Ensembl:

ensembl_id ENSDART00000168639

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025332 lncRNA upstream 409285 14693774 ~ 14697233 (+) True XLOC_012674
TCONS_00025329 lncRNA upstream 451337 14652796 ~ 14655181 (+) True XLOC_012672
TCONS_00025328 lncRNA upstream 457223 14647920 ~ 14649295 (+) False XLOC_012672
TCONS_00025327 lncRNA upstream 458629 14645724 ~ 14647889 (+) False XLOC_012672
TCONS_00027070 lncRNA upstream 867059 14234369 ~ 14239459 (+) True XLOC_012665
TCONS_00026877 lncRNA downstream 303010 15432706 ~ 15436113 (+) False XLOC_012680
TCONS_00026878 lncRNA downstream 303768 15433464 ~ 15437197 (+) False XLOC_012681
TCONS_00027071 lncRNA downstream 303858 15433554 ~ 15441472 (+) False XLOC_012681
TCONS_00026879 lncRNA downstream 304063 15433759 ~ 15440397 (+) False XLOC_012680
TCONS_00026880 lncRNA downstream 304423 15434119 ~ 15434512 (+) False XLOC_012681
TCONS_00025331 mRNA upstream 400519 14693682 ~ 14705999 (+) False XLOC_012674
TCONS_00025330 mRNA upstream 418080 14684115 ~ 14688438 (+) True XLOC_012673
TCONS_00025323 mRNA upstream 438120 14633974 ~ 14668398 (+) False XLOC_012672
TCONS_00025326 mRNA upstream 438642 14645639 ~ 14667876 (+) False XLOC_012672
TCONS_00025325 mRNA upstream 457072 14645568 ~ 14649446 (+) False XLOC_012672
TCONS_00025335 mRNA downstream 2416 15132112 ~ 15141119 (+) True XLOC_012677
TCONS_00025336 mRNA downstream 45782 15175478 ~ 15188054 (+) False XLOC_012678
TCONS_00025337 mRNA downstream 53269 15182965 ~ 15188054 (+) True XLOC_012678
TCONS_00025338 mRNA downstream 142297 15271993 ~ 15289997 (+) True XLOC_012679
TCONS_00025339 mRNA downstream 486471 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025333 other upstream 109813 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 457223 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1157594 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3275498 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3649188 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025343 other downstream 582733 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 1003988 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 1586255 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 1592103 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1848932 16978628 ~ 16983066 (+) False XLOC_012711

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_06928494_06938304.mRNA True 1724 mRNA 0.51 11 CI01000013 6928468 ~ 6938304 (-)