XLOC_012711 (CR925798.1)


Basic Information

Item Value
gene id XLOC_012711
gene name CR925798.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16978628 ~ 16983066 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025380
TTAAACATCACGAGGGCCGCATACTTTAGGTTGTGCTTAGGTGGCGTGGACaaccactgtacaacatttactggtcacagctgaatcagtttaaatttcaacaagccgtcgtctcattcatcaacaactgaggagacgctattttcacatggagaatgGTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCCGATCTATGGAAAGAATAATTGAATGAGcgagcaacgccacaactacaggacctcttctttctcttctcataatttaactggattatctgttgaatttgtttttttcctctgacagctttctccataccaacaactatgcctggtcttcagctgcgctccccggtctgctgtattctccagtccagCTTCACTGCCCAGtgtctgaattttaatttatatatttatttatatatatatatttacattttaatgatttcttgtttacttttcttgtttgcttaccctttagtttaattatatatatatatatatgtatatatatatatatatatatataatctaaactttatactgtttgtttataattagatgtgtactgtatgtattaaatgttgtgaaatatataataaaaagtttgattata
>TCONS_00025381
gtttaaatttcaacaagccgtcgtctcattcatcaacaactgaggagacgctattttcacatggaggtaatcttctattgataatttctggattttaaaatgGTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCCGATCTATGGAAAGAATAATTGAATGAGcgagcaacgccacaactacaggacctcttctttctcttctcataatttaactggattatctgttgaatttgtttttttcctctgacagctttctccataccaacaactatgcctggtcttcagctgcgctccccggtctgctgtattctccagtccagCTTCACTGCCCAGtgtctgaattttaatttatatatttatttatatatatatatttacattttaatgatttcttgtttacttttcttgtttgcttaccctttagtttaattatatatatatatatatgtatatatatatatatatatatataatctaaactttatactgtttgtttataattagatgtgtactgtatgtattaaatgttgtgaaatatataataaaaagtttgattata
>TCONS_00025382
gctattttcacatggagaatgGTTTCAGCTGTTGAATTCACCTCAGATCAGTGTTGCTGTAATTCCCGATCTATGGAAAGAATAATTGAATGAGgaaaaaatacaacgttgtgcagacatcgctacaacgtaaatgtgtttgttggggacccaacaaacacacaacgttgcctcaacgtagcgaccttcctacaacgttgtaccaaccttgcaaaaaggttgaggattctacgttgttgctaaacgttgtcacaacgatgtcataaggttgccatttaaacatcacGAGGGCCGCATACTTTAGGTTGTGCTTAGGTGGCGTGGACaaccactgtacaacatttactggtcacagctgaatcagtttaaatttcaacaagccgtcgtctcattcatcaacaactgaggagacctgcgctccccggtctgctgtattctccagtccagCTTCACTGCCCAGtgtctgaattttaatttatatatttatttatatatatatatttacattttaatgatttcttgtttacttttcttgtttgcttaccctttagtttaattatatatatatatatatgtatatatatatatatatatatataatctaaactttatactgtttgtttataattagatgtgtactgtatgtattaaatgttgtgaaatatataataaaaagtttgattata

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000095584

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025380 False 628 processed_transcript 0.33 5 16978628 16983066
TCONS_00025381 False 572 processed_transcript 0.31 5 16978716 16983066
TCONS_00025382 True 686 processed_transcript 0.35 4 16979565 16983066

Neighbor

gene id symbol gene type direction distance location
XLOC_012710 si:ch211-242e8.1 coding upstream 6944 16960966 ~ 16971684 (+)
XLOC_012708 si:dkey-8l13.5 coding upstream 27847 16940440 ~ 16950781 (+)
XLOC_012709 NA coding upstream 36781 16941462 ~ 16941847 (+)
XLOC_012707 NA coding upstream 116209 16798755 ~ 16862419 (+)
XLOC_012706 rnf141 coding upstream 222484 16749091 ~ 16756144 (+)
XLOC_012712 NA coding downstream 3024 16986090 ~ 16989717 (+)
XLOC_012713 chtf8 coding downstream 37901 17020967 ~ 17024878 (+)
XLOC_012714 BX950194.1 coding downstream 89009 17072075 ~ 17074021 (+)
XLOC_012715 trhr2 coding downstream 168850 17151916 ~ 17173920 (+)
XLOC_012716 NA coding downstream 195427 17178493 ~ 17180077 (+)
XLOC_012704 NA non-coding upstream 256646 16721799 ~ 16721982 (+)
XLOC_012700 NA non-coding upstream 662817 16310121 ~ 16315811 (+)
XLOC_012689 CR536616.1 non-coding upstream 1266083 15712429 ~ 15712545 (+)
XLOC_012719 NA non-coding downstream 490909 17473975 ~ 17483224 (+)
XLOC_012728 BX470170.1 non-coding downstream 692274 17675340 ~ 17675455 (+)

Expression


Co-expression Network