XLOC_012715 (trhr2)


Basic Information

Item Value
gene id XLOC_012715
gene name trhr2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17151916 ~ 17173920 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025388
GTTAAGGAGACTTACAGTTAAAAGAGTGCATTTACTAGCGCTTCTGTACAAGATCAGATTATTTGCTCGTCATGTCAAATACTTCATATCAgtgcattttgttttttgatcTGGGGTTTACAGTCGACAGTGCGTGAGAGCTGATTTCGTTCAACACTACAAGAATGATTCTGGGTGATCGATTGGATGGACGATTGCATTAACGtggaaggagaaaaaaaatgcagGCTCTGGATTTCAGTGCTTTCAATGGATACTGTTACAGATTAACAATGAAGAAATAATGGGCTGCGGTCAGCAGAGGAAGGCTATTACACTGTTGATGGCAAGAAAATTAAACAACACACTTAATAAAAGAAAAGCCCATCAGTAAAaagctatttttatatatacagtttgaaTCAAACAACTTCCATActgctttttttctgctgttatcGTGTAAGTATTGACACAGAGAGGACTAATGATGCAGGAAAATGTGAGCTCCAGGATGGACACTCCAACCAATATCTCTTTGGTGGGCTCTGGAGATGCCGTGACCGAGTCCTTGGAGTATAAGACTGTTTCTGTATTTCTGGTcctgctggtgtgtggtgtgggcATTGTGGGAAACATCATGGTGGTGCTGGTGGTTCTTACCACACGCCACATGCGAACACCCACCAACTGCTATTTGGTGAGCCTGGCTGTGGCCGATCTGATGGTCCTGGTGGCTGCGGGTCTGCCGAACATCTCAGAGAGCCTGATGGCAACCTGGGTGTACGGGCACGCTGGATGTCTGGGCATCACCTACTTTCAGTACCTTGGCATTAATGCGTCCTCCTGTTCAATCACGGCATTCACTGTGGagagATACATCGCCATATGCCACCCAATGAGGGCGCAGACCGTGTGTACAGTATCCCGAGCCAAGCGCATCATAGCTGTTGTGTGGGTTTTCACCTGTGTTTACTGTATGCTCTGGCTCTTCCTGGTGGACATCCAGGTGAATCCTGACGGCCGAGTGCAGTGCGGATACCGTGTCTCTCGAGATCTTTACCTGCCCATTTACCTGATCGACTTCACCATCTTCTATGTCATTCCTTTACTCCTGGCCATCGCTCTTTATGGTCTCATTGCCCGAATCCTGTACCTGAATCCTCTGCCGCATCCGCCAGATTCAGGTACCGTCATTGCTCCAACTCTTAGAAGAAGCTGCAAAGAACCGGCTGATGGAGGGAAGGCAATTCGTCAGGGACGCCCTAAGAGTGCACTTTCTTCTCGGAAACAGGTCACCAAGATGTTGGCTGTGGTGGTTGTACTTTTCGCCCTGCTCTGGATGCCCTACAGGACCCTGGTCCTCATCAACTCCTTCGTCAGCACGCCATACCTGGATTCCTGGTTCATTCTCTTCTGCAGGACCTGCATTTACGCTAACAGCGCCATCAACCCTGTCGTTTACAATCTGATGTCCCAGAAGTTTCGCTCGGCCTTCCGCGGACTGTACCGCTGCCGTAGGGAAGATTTGCACCAAAGGACACTCTCAATGCTCCAGAGCGGATACAGCCTAGGAAGAGACCCGCGAATCTGCAGCAACGGCACCAGAGACACTCCTAAGAAAGTCGGTTCAGTCACTCCAGAGCAGAAACAAAACAAGGGCTTTGAGAACAAGGTggaaaatacagacagacagattagcGACGGTGTTGAAAATGAGATTAATCCGAGCATCAAGAAAAATGCATGCGCAAATTGTGACATAGATGAATCGAAAACCTCAGAGATGCCTACAGTGGAGGACGTGGACATGAGCAAGATTAATGATAATGGGAAAATAATGGAGGAAAGCGGTAATAGTGCTCAGGATATTATCGCTGACATGAGCAACACACAGCAGACACAACGAGTGTCCGGTGAATTCACATCTACTCTGGGGGAAGCAGAACAGAATGATGCAGAGCTCAGTCACAGTGTTTTATAG
>TCONS_00025389
ATGATGCAGGAAAATGTGAGCTCCAGGATGGACACTCCAACCAATATCTCTTTGGTGGGCTCTGGAGATGCCGTGACCGAGTCCTTGGAGTATAAGACTGTTTCTGTATTTCTGGTcctgctggtgtgtggtgtgggcATTGTGGGAAACATCATGGTGGTGCTGGTGGTTCTTACCACACGCCACATGCGAACACCCACCAACTGCTATTTGGTGAGCCTGGCTGTGGCCGATCTGATGGTCCTGGTGGCTGCGGGTCTGCCGAACATCTCAGAGAGCCTGATGGCAACCTGGGTGTACGGGCACGCTGGATGTCTGGGCATCACCTACTTTCAGTACCTTGGCATTAATGCGTCCTCCTGTTCAATCACGGCATTCACTGTGGagagATACATCGCCATATGCCACCCAATGAGGGCGCAGACCGTGTGTACAGTATCCCGAGCCAAGCGCATCATAGCTGTTGTGTGGGTTTTCACCTGTGTTTACTGTATGCTCTGGCTCTTCCTGGTGGACATCCAGGTGAATCCTGACGGCCGAGTGCAGTGCGGATACCGTGTCTCTCGAGATCTTTACCTGCCCATTTACCTGATCGACTTCACCATCTTCTATGTCATTCCTTTACTCCTGGCCATCGCTCTTTATGGTCTCATTGCCCGAATCCTGTACCTGAATCCTCTGCCGCATCCGCCAGATTCAGGTACCGTCATTGCTCCAACTCTTAGAAGAAGCTGCAAAGAACCGGCTGATGGAGGGAAGGCAATTCGTCAGGGACGCCCTAAGAGTGCACTTTCTTCTCGGAAACAGGTCACCAAGATGTTGGCTGTGGTGGTTGTACTTTTCGCCCTGCTCTGGATGCCCTACAGGACCCTGGTCCTCATCAACTCCTTCGTCAGCACGCCATACCTGGATTCCTGGTTCATTCTCTTCTGCAGGACCTGCATTTACGCTAACAGCGCCATCAACCCTGTCGTTTACAATCTGATGTCCCAGAAGTTTCGCTCGGCCTTCCGCGGACTGTACCGCTGCCGTAGGGAAGATTTGCACCAAAGGACACTCTCAATGCTCCAGAGCGGATACAGCCTAGGAAGAGACCCGCGAATCTGCAGCAACGGCACCAGAGACACTCCTAAGAAAGTCGGTTCAGTCACTCCAGAGCAGAAACAAAACAAGGGCTTTGAGAACAAGGTggaaaatacagacagacagattagcGACGGTGTTGAAAATGAGATTAATCCGAGCATCAAGAAAAATGCATGCGCAAATTGTGACATAGATGAATCGAAAACCTCAGAGATGCCTACAGTGGAGGACGTGGACATGAGCAAGATTAATGATAATGGGAAAATAATGGAGGAAAGCGGTAATAGTGCTCAGGATATTATCGCTGACATGAGCAACACACAGCAGACACAACGAGTGTCCGGTGAATTCACATCTACTCTGGGGGAAGCAGAACAGAATGATGCAGAGCTCAGTCACAGTGTTTTATAG

Function

symbol description
trhr2 Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007200 phospholipase C-activating G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004997 thyrotropin-releasing hormone receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-193 Predicted to enable thyrotropin-releasing hormone receptor activity. Predicted to be involved in phospholipase C-activating G protein-coupled receptor signaling pathway. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000093901

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025388 False 1963 mRNA 0.48 4 17151916 17173920
TCONS_00025389 True 1497 mRNA 0.51 3 17155896 17173920

Neighbor

gene id symbol gene type direction distance location
XLOC_012714 BX950194.1 coding upstream 77895 17072075 ~ 17074021 (+)
XLOC_012713 chtf8 coding upstream 127038 17020967 ~ 17024878 (+)
XLOC_012712 NA coding upstream 162199 16986090 ~ 16989717 (+)
XLOC_012711 CR925798.1 coding upstream 168850 16978628 ~ 16983066 (+)
XLOC_012710 si:ch211-242e8.1 coding upstream 180232 16960966 ~ 16971684 (+)
XLOC_012716 NA coding downstream 4573 17178493 ~ 17180077 (+)
XLOC_012717 ces3 coding downstream 244334 17418254 ~ 17426306 (+)
XLOC_012718 zgc:91860 coding downstream 254338 17428258 ~ 17461796 (+)
XLOC_012719 NA coding downstream 300055 17473975 ~ 17483224 (+)
XLOC_012720 si:dkey-102f14.7 coding downstream 301069 17474989 ~ 17476941 (+)
XLOC_012709 NA non-coding upstream 210069 16941462 ~ 16941847 (+)
XLOC_012707 NA non-coding upstream 289497 16798755 ~ 16862419 (+)
XLOC_012728 BX470170.1 non-coding downstream 501420 17675340 ~ 17675455 (+)
XLOC_012734 NA non-coding downstream 939123 18113043 ~ 18379358 (+)
XLOC_012735 BX649612.2 non-coding downstream 1077579 18251499 ~ 18251615 (+)

Expression


Co-expression Network