Fish Transcriptome and Expression Database

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model fish

XLOC_012735 (BX649612.2)

Basic Information

Item	Value
gene id	XLOC_012735
gene name	BX649612.2
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007129.7
NCBI id	CM002902.2
chromosome length	51023478
location	18251499 ~ 18251615 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025438
ctgaaTAATTATATCCCCCtacagcccaagaccggttactcactgaaacttagcagggctgagcctggtcagtacctggatgggagaccacatgggaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109398

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00025438	True	117	rRNA	0.50	1	18251499	18251615

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_012733	cbln1	coding	upstream	141467	18104235 ~ 18110032 (+)
XLOC_012732	si:ch211-212o1.2	coding	upstream	190955	18000695 ~ 18060544 (+)
XLOC_012731	ZNF423	coding	upstream	254025	17786548 ~ 17997474 (+)
XLOC_012730	si:ch211-216l23.2	coding	upstream	475911	17754510 ~ 17775588 (+)
XLOC_012729	rspry1	coding	upstream	499656	17725410 ~ 17751843 (+)
XLOC_012736	n4bp1	coding	downstream	154377	18405992 ~ 18422543 (+)
XLOC_012737	siah1	coding	downstream	187717	18439332 ~ 18472257 (+)
XLOC_012738	st3gal2	coding	downstream	360773	18612388 ~ 18631082 (+)
XLOC_012739	NA	coding	downstream	424058	18675673 ~ 18676884 (+)
XLOC_012740	NA	coding	downstream	457274	18708889 ~ 18710155 (+)
XLOC_012728	BX470170.1	non-coding	upstream	576044	17675340 ~ 17675455 (+)
XLOC_012719	NA	non-coding	upstream	768275	17473975 ~ 17483224 (+)
XLOC_012716	NA	non-coding	upstream	1071422	17178493 ~ 17180077 (+)
XLOC_012714	BX950194.1	non-coding	upstream	1177478	17072075 ~ 17074021 (+)
XLOC_012712	NA	non-coding	upstream	1261782	16986090 ~ 16989717 (+)
XLOC_012741	BX649641.6	non-coding	downstream	474363	18725978 ~ 18726093 (+)
XLOC_012742	NA	non-coding	downstream	481532	18733147 ~ 18770894 (+)
XLOC_012743	NA	non-coding	downstream	489212	18740827 ~ 18812908 (+)

Expression

Co-expression Network