XLOC_012729 (rspry1)


Basic Information

Item Value
gene id XLOC_012729
gene name rspry1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17725410 ~ 17751843 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025421
GACTTCCCATCATTTACACTACACCGAGTGCTCCCGTTGATCCTCCGGCTATCTTACACTGATTCTAACCAGTCCTCATGCTTTCACTTCTCAGCCCAACGTTGAGTTTCGTCTTTAGTTTTCGGCTCGCTCTGTATTTGTTTGCGGCTCGACAATATGCTGATTGTTAAAGTGGTGGTGTTGTCGAGTACGAGTCATTTTGCTGAGAAGTAaagcgcacacactcacacttccCGTGTAGTCTTTGTGTTCGGCCTACGGATCTGTGCTGCTGCATTTACCGACTATTTTCCGCTTTACCAGGACTTCAATCTCCCAGGCTGTAGGATGTGTGTTGACTGCTCCATCAGTTTTGTTTGTTCGTCTCTGGATGCTGATGGTCTGCAGTAGCGCAATGACCGACACGTCTACGCGACCCGTACCGAGACACCCACTAAAGTCCTTCCAATGATATGATAGTAGCCACCTGGATTGCATTCTGTGCCACCAGGAGCCTCGTGCGGGTTCTCCGACTCACCGTAGAACAGCTGCAGTCAGTGCAGTTTTGGGCCAGCCTCTCGTCCGGCAGAGCCATGGGGAACAGCTGCGTGTGCAGGGAGGACAGTGACGTGGAGGAAGGATCAGCCTCTCGCAGGCAGCTCAGGCGGGTGGATAACTCTGTGTCTGATCCACCGGAGGCCAGAGGGAGTCGGCCCAGGGACCCGGTTCGACCACCCAGAAGAGGTCGAGGGCCACACGAGCCACGTCGGAAAAAACAAAACGTGGACGGTTTGGTACTAGACACGCTGGCCGTCATCAGGACTCTTGTAGACAATGATCAAGAGCCGCCATATTCCATGATCACACTGCACGAGATGGCAGAGACTGATGATGGCTGGTTGGAAGTGGTGCAGTCTTTAGTTAGAGTAATTCCTCTAGATGACCCTCTAGGACCAGCCGTAATAACACTGCTACTGGACGAATGCCCTTTGCCAACCAAAGATGCTCTGCAGAAGTTGTCAGACATGTTGAATCTGAGTGCTGCTGTGGCGCGTCAGGATGCCCTCATACCAGCTAAACACCGCAACACCACAGCAGTCCTGGGCTGTCTGGCTGAGAAACTGGCTGGTCCAGCAAGCATTGCACTCCTCAGCCCTGGAACTCTGGAGTACTTGCTTGAGAGTTTGAGTTCTGAAGCCCACCCCACTGTTATGCTGTTTGCTCTTATTGCTTTAGAGAAGTTCTCACAAACCAGTGAGAACAAGTTAACGGTGTCAGAGTCATGTATCAGTGACCGTTTGTCTGTTCTGGAATCCTGGGCAGATAACTTAGATTACCTAAAGCGCCAAGTGGGCTTCTGCGCTCAGTGGAGTCTTGATAACCTCTTCATTAAAGAGGGGCGCCAGTTTACCTATGAGAAAGTCAACTTAAGCAACATCAACGCCATGCTGAACAGTAATGACGTCAGTGAATATCTCAAGATCTCTCCTACTGGACTGGAGGCCCGTTGTGACGCATCATCATTTGAGAGCGTCCGCTGCACGTTCTGTGTGGATTCGGGGGTTTGGTACTATGAGGTCACGGTTATCACCTCTGGCGTCATGCAAATTGGCTGGGCAACCAAGGACAGCAAGTTTCTCAACCATGAGGGTTATGGGATTGGAGATGATGAGTACTCGTGTGCGTATGACGGCTGCAGGCAGCTGATCTGGTACAACGCTCgcagtaaacctcactcccaccCCTGCTGGAAAGAAGGTGATGCCATAGGCTTCCTGCTGGACCTCAGTAAGAAGCAGATGATTTTCTACCTTAACGGACACCAGCTGCCTCCTGAGAAGCAGGTGTTCTTCTCTGCCACGTCTGGCTTCTTTGCTGCAGCCAGTTTTATGTCCTATCAACAGTGTGAGTTCAACTTCGGAGCCAAACCCTTCCGCCATCCCCCCTCCATCAAATTCAACACCTTTAATGAGTTTGCCTCGCTCGCATCAGACGAGAAAATCATTCTGCCCAGacacAGACGCCTAGCATTGCTCAAGCAGGTTAGCATCAGAGATAACTGCTGCACCCTCTGCTGCGACCAGATGGCGGACACTGAACTGAGACCCTGTTCGCACAGTGGGATTTGTATGGAGTGTGCCTTACAGCTGGAAACATGCCCACTGTGTCGTCAAGACATCAAGACACGAGTCAGACTCATTTCCCACGTGTCCTGACATCAGCCCATCAACCCTAAATGTGGACTTTCCCCATCAAGCTTCCATCCTGTCCAGTCCCTTCAGTCCGAGAGATCGACCTGACCAATCGAAACCAAGATGCTGTCTCAGGATTGGACGCAACAGCGCTGGCCTTTGACGGATGGAGTAGATCCTCCTTTAAACTGGAGGGAAGAAGAGAGAATAAAATATTGACTGGTAGAGAAAACTACTATTGCACTCCAAGAAGGCCCCTATCAATAGAGGGCTATTCAGAAGCTGGAAAGTTTAAAGGCTGCTGAGAATTTAAATCTGCATTTCCAGGAAAAGCTTAAATATGGAACAAATGCATCCATTACATGCTGTTCTGTCTTTGAGTCTCTTCCCCCTCAAGCTCTGGTCAGGGTCTACTACTGTGTGTCTCTGTTCagatgtttaatatatatatatacatatatatgtgacctctctctctctctttttttttaaatctcaacaGGAAACAGCAACAGTGTCTTAACCACTTTGTTTCCTCATGCCTGCCTCAGAAAACCCATTATTTTTTGCTCTCTCAGACTTGATTGTACTTGAATCTGTTCTGGGTTGATTGCCCCACATTCTCAATATGGATGCGGAATGTCTTGGTGAGTCAAGACacagtgatttcttttttttaaatagtattttatattgACATATGATGCAAagttaatttagaaataaattaaGCCAAATTGGAACGTTTAGATTGAGTATTAATGAGTGAATATTGATTCCATCAGTCTCGAAAGGCGATTTTTAATGAGAGGAAATTTCAGAAGATTTCCGCAATGGTTAATGCACATATCAGTGTCCTTATGCTGCTGATGCTTAATGTGAACTTTCTAAAGCAGATACAAGACTGAAATCTCCAGCGCTCCCAAAGATAAGAGAGTGTGATTGAATTAAGAATCTTTCATTTTCTGATTTGTGTTGTTTGTAATAAATGTCTGTTTATGTGTTGCTTATTGTA

Function

symbol description
rspry1 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human RSPRY1 (ring finger and SPRY domain containing 1).

GO:

id name namespace
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-061026-2 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in proteolysis involved in cellular protein catabolic process. Predicted to be active in cytoplasm. Orthologous to human RSPRY1 (ring finger and SPRY domain containing 1).

Ensembl:

ensembl_id ENSDARG00000062558

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025421 True 3186 mRNA 0.47 15 17725410 17751843

Neighbor

gene id symbol gene type direction distance location
XLOC_012727 cpne2 coding upstream 20864 17660158 ~ 17704546 (+)
XLOC_012728 BX470170.1 coding upstream 49955 17675340 ~ 17675455 (+)
XLOC_012726 nlrc5 coding upstream 67608 17624295 ~ 17657802 (+)
XLOC_012725 herpud1 coding upstream 103584 17600570 ~ 17621826 (+)
XLOC_012724 slc12a3 coding upstream 126655 17583479 ~ 17598755 (+)
XLOC_012730 si:ch211-216l23.2 coding downstream 2667 17754510 ~ 17775588 (+)
XLOC_012731 ZNF423 coding downstream 34705 17786548 ~ 17997474 (+)
XLOC_012732 si:ch211-212o1.2 coding downstream 248852 18000695 ~ 18060544 (+)
XLOC_012733 cbln1 coding downstream 352392 18104235 ~ 18110032 (+)
XLOC_012734 NA coding downstream 361200 18113043 ~ 18379358 (+)
XLOC_012719 NA non-coding upstream 242186 17473975 ~ 17483224 (+)
XLOC_012716 NA non-coding upstream 545333 17178493 ~ 17180077 (+)
XLOC_012714 BX950194.1 non-coding upstream 651389 17072075 ~ 17074021 (+)
XLOC_012712 NA non-coding upstream 735693 16986090 ~ 16989717 (+)
XLOC_012735 BX649612.2 non-coding downstream 499656 18251499 ~ 18251615 (+)
XLOC_012739 NA non-coding downstream 923830 18675673 ~ 18676884 (+)
XLOC_012740 NA non-coding downstream 957046 18708889 ~ 18710155 (+)
XLOC_012741 BX649641.6 non-coding downstream 974135 18725978 ~ 18726093 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_05420341_05434084 RSPRY1 coding CI01000013 null 5420157 ~ 5434084 (-)