XLOC_012730 (si:ch211-216l23.2)


Basic Information

Item Value
gene id XLOC_012730
gene name si:ch211-216l23.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17754510 ~ 17775588 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025422
AATGAAGCGTTAGCAGGTCTATTGGCGGAATCCTTGAGGAGTAGCACGGATTAGCAACTATTATTCACACATTTTGTCTAAAAATAATCTCACTTTGTATTGATCACGTCGAAGATTAAACAACGCATCTGCAAATTAATCAATTTATCGCGATAAACAAAAGCCACAGGAGTACGTTACAGCCGTATCTCTGCCAAGAAGAGGTGAAATGTCGTCGTGGGGAAAAAAAGCCGGGGGCAGACGACAAAAACACGGAGGAGGAGGTGGCCAAAAATCTAACAAATCGTTTCGGAGACCACCATATCCTGTGAGACAGGAGAGAACTGAGGAACATCTGCAACTTGAGAGTTTTCAGAGCTTAGAAGAAACCATTGACTACTCTAGCATAGTAGACTATGAACATTCATCACATAAGATAACAGGTTTACCAAGTGCTTCACGGGAACAATATGATGTATCAACTCAGCATCCTGAATTATATGAACGGTTTTACCAGCAGTTGTGTGGAGAAAGTGCTCGACGCCCTGCAGACTGTGTTGTCCTGTCAGTGAATAACCAGGATGTGTAAGTATATATTACATGTAGAGTTATGTTGCATTAGGTATTTTTAATATGGTAAGTTTGTTTAttgctttaaatgaaaaaaacagactaactttttttaatgcagtaAAAATGCAGAAAAATGGTTTATCTAATGTTTTTTGAAAGTTCTGTTGTGTGAATTGTTAAAATGTAGCTTGAATGATATTCAACAAGACTAAGCTTTATCTTCGTGCTCAGATCAATTTGCAAAATGTTCAATGGAATTATATACAccttcaaaaacaaacaaacaaaatacaccaAATCCCTTGTTTAAAGTTTTCACCATTTTCAAATGCACTGATTATCAAATGTCACTGAAATGTCTTTCAATCTCCCAGTAGTCTTTATGTATGAATTAAACAAATGCGAATATTATAgtccaacttaaaaaaaaaaaacactaaacacaatGCATCCCCCTAcataaactttattattttttaataatacaataaatgtacataataaaaaatgtttggttACCGTTTATTTTAAGGTGGCCTTGTTACTGtgcaattattattttgcataccAGGTAATGATAATTAGCTACAAGAACTTCCTGTAGATTTTAGGTTTTggtgtaattatgcataatataCTGATATTACTATAGTACTTGTA
>TCONS_00025423
AAGCGTTAGCAGGTCTATTGGCGGAATCCTTGAGGAGTAGCACGGATTAGCAACTATTATTCACACATTTTGTCTAAAAATAATCTCACTTTGTATTGATCACGTCGAAGATTAAACAACGCATCTGCAAATTAATCAATTTATCGCGATAAACAAAAGCCACAGGAGTACGTTACAGCCGTATCTCTGCCAAGAGGTGAAATGTCGTCGTGGGGAAAAAAAGCCGGGGGCAGACGACAAAAACACGGAGGAGGAGGTGGCCAAAAATCTAACAAATCGTTTCGGAGACCACCATATCCTGTGAGACAGGAGAGAACTGAGGAACATCTGCAACTTGAGAGTTTTCAGAGCTTAGAAGAAACCATTGACTACTCTAGCATAGTAGACTATGAACATTCATCACATAAGATAACAGGTTTACCAAGTGCTTCACGGGAACAATATGATGTATCAACTCAGCATCCTGAATTATATGAACGGTTTTACCAGCAGTTGTGTGGAGAAAGTGCTCGACGCCCTGCAGACTGTGTTGTCCTGTCAGTGAATAACCAGGATGTGGAATACCCCAAATCATTAGGCCAGTGTTTGCAGGAACTTGGCCTCACTGTGGAAATGCTTTACCTGCAGTCGGAATCAGGCCTGACGCGGGCCCTCCAAGATGTCCGCTCCGACGGTTCCCCCTTTTGTATTCTCGTCGAGCAGACTAATGTAACACTTTCCTCGTGCACAGTAATCATATTTTCAGAGTCCCTCAAAATTCATCGAAATATGCCTAAAGAACATGCTATGGAGTTTGTGTTGACGGAGTATGGGCGCCAGAGCAGCCCGCAGCGGGCGTTGAACCCCACGGAGGCTGCGACGCGGGCGGCTGAGCTGACGGAGGACTACCTGGAGCGCGGCAAGCTGGAGCGCCACACCGTTCCCTTCACCACCCGCCACCTGCTCTTCCTCCTGGCCGAAGGGTTGCACCTGTACCCGGAGGAGGTTAGCACACTGGCTGTGTTTCTCCAGAACCGCCAGGACCATCTGCAAGCGTCTTCTACTGCGGTTGACAGGGAAGCTGCTCCTCTGATAAACAGCCTGCCCACAGGGTTAGGAAAACCTCCACCTCTTCTGCCTGCTGGTACTGGACCAGCACCAAGAGAGCAGATAAACACACCCTCAAGCTCAGGAGATGTTTCCTCTGGCCTTCAAATTGGATTGACAGGCACGTTTCCCAAGACGAAACCCCCTCCATTGCTATCAATGCAAAACCTGAAGCCCCCTTCACACAGATTATCTGCCCCCCACAGTCTTTTACCCTCTCTGGCCCAGTCATCTCGAGGGGCAGCTGCTTCTCATGGTCTGGACAAGCCTCAGCCTCTCCTTGGTCCTGGATCCACTTTTGTACCTGCGCCGTCCTCCGCTCGTCCAGGCGGTCTGCTCGACACTCCGTTGCTCTCTTTCCAGTCCTCTAGAGGACTCCTGCCACATCCAGGGGCTCATTTATTGCGAAGCTCTCTATTGACTCGCGTACTCCCACTGCAAAATGGACCCCATGGCCCTCGAGCAGCTCCACCACAACTCAGGAGCCTCCAAATGGGAGCCCAAACAGGTCCGCGGCCCCTACGACGCCTGCTTCCTTGATTTCCCTCAGGACGGCTGAGTAAATCATAGCTCTATAATGCCACCTGGAACAGTTCtaacattttgaacttgcagctttcttttgtatttttaggAGTTTGACCCTTGTGTTTTCTGTCAGGATCCTTTACATTGTTTAAATATGTTCTGGTATGAAAAAATATCAAAAGTGGTGTTTTCTTTATTCCTACAGATTTTTAAAAGATTAGGCCTGTGCAGATGTCTTTTCACACCAGTGTTCTCCACACAATTGTTGAATATGTTTCAGATTTTGTTTTTTGGTTAAAAACCTGTCCAGAAGACCGTTAGCTGTGTAGATcgataaatagataaatgttgCTGAATACCATTCATTAAACTCTCTTGTTGAAAAGGA
>TCONS_00025424
CGTTAGCAGGTCTATTGGCGGAATCCTTGAGGAGTAGCACGGATTAGCAACTATTATTCACACATTTTGTCTAAAAATAATCTCACTTTGTATTGATCACGTCGAAGATTAAACAACGCATCTGCAAATTAATCAATTTATCGCGATAAACAAAAGCCACAGGAGTACGTTACAGCCGTATCTCTGCCAAGGTACGACGAAATTCGCTTCAGATTTGTGTTTTAAtagcaatagttttaataaatatttttttatattggacTTTGTTTTAACTGTAGATATGCATATGTTCATTTTTTAAGAAATTAGGGTTGAGCCAATGCAGAATTAGCTTGATAAACAGAACGCTGCCATCTTGTGCCGCGCGgtatttgtttattatgtttaCTGTGGCTTTCTGTAACGATATACTGAAATTTATCTAGAAGAGGTGAAATGTCGTCGTGGGGAAAAAAAGCCGGGGGCAGACGACAAAAACACGGAGGAGGAGGTGGCCAAAAATCTAACAAATCGTTTCGGAGACCACCATATCCTGTGAGACAGGAGAGAACTGAGGAACATCTGCAACTTGAGAGTTTTCAGAGCTTAGAAGAAACCATTGACTACTCTAGCATAGTAGACTATGAACATTCATCACATAAGATAACAGGTTTACCAAGTGCTTCACGGGAACAATATGATGTATCAACTCAGCATCCTGAATTATATGAACGGTTTTACCAGCAGTTGTGTGGAGAAAGTGCTCGACGCCCTGCAGACTGTGTTGTCCTGTCAGTGAATAACCAGGATGT

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3806 No description available

Ensembl:

ensembl_id ENSDARG00000069122

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025422 False 1212 mRNA 0.34 5 17754510 17760150
TCONS_00025423 False 2002 mRNA 0.48 10 17754514 17775588
TCONS_00025424 True 791 mRNA 0.39 4 17754517 17759502

Neighbor

gene id symbol gene type direction distance location
XLOC_012729 rspry1 coding upstream 2667 17725410 ~ 17751843 (+)
XLOC_012727 cpne2 coding upstream 49964 17660158 ~ 17704546 (+)
XLOC_012728 BX470170.1 coding upstream 79055 17675340 ~ 17675455 (+)
XLOC_012726 nlrc5 coding upstream 96708 17624295 ~ 17657802 (+)
XLOC_012725 herpud1 coding upstream 132684 17600570 ~ 17621826 (+)
XLOC_012731 ZNF423 coding downstream 10960 17786548 ~ 17997474 (+)
XLOC_012732 si:ch211-212o1.2 coding downstream 225107 18000695 ~ 18060544 (+)
XLOC_012733 cbln1 coding downstream 328647 18104235 ~ 18110032 (+)
XLOC_012734 NA coding downstream 337455 18113043 ~ 18379358 (+)
XLOC_012735 BX649612.2 coding downstream 475911 18251499 ~ 18251615 (+)
XLOC_012719 NA non-coding upstream 271286 17473975 ~ 17483224 (+)
XLOC_012716 NA non-coding upstream 574433 17178493 ~ 17180077 (+)
XLOC_012714 BX950194.1 non-coding upstream 680489 17072075 ~ 17074021 (+)
XLOC_012712 NA non-coding upstream 764793 16986090 ~ 16989717 (+)
XLOC_012739 NA non-coding downstream 900085 18675673 ~ 18676884 (+)
XLOC_012740 NA non-coding downstream 933301 18708889 ~ 18710155 (+)
XLOC_012741 BX649641.6 non-coding downstream 950390 18725978 ~ 18726093 (+)

Expression


Co-expression Network