XLOC_012727 (cpne2)


Basic Information

Item Value
gene id XLOC_012727
gene name cpne2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17660158 ~ 17704546 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025417
AGAACATTTGCGCGCGTCCGCGCTCTAGCAAAAATCCATCAAGATAAAAAAGGCACAAACGTAAAACACGTGTTAATTTACTAGCTTTCCACCTTTTTTTTCCTATTAAGCTCTTCCCGGCGGTGGCATCGTTGAGAAGAACAGGCGAGCTCTGTAATGACAGATGTGCACACGGGCGGAGTTCAGAGCTGTGAAAACTACACAACTGTTGGTTCATTGAGCGCGCGACTCTGGAAGTCTGCACGCGCGGGAAGCACTTTCTTCCTCTTTAACGTCGTTTACCATCTGATAAATCATAACTGGCATATATTATTATCTGGATGGATAGTGTAATCAACCCACAGACATTTTGAAGCGCACAGCTGCTGCCACATTACTACAAATAACGACAGAAGACGCTGAAGAAAAGTAAGGCTGCGCATTGCTTCGAGAGGGTGTAGGAGAGGAGGTACTCCCTTCTCCATGGCCTATACTCTGGGCTCGGGGCCCGATGTGGGTCCTGCATTAGGGCCCCAGCACTGCGTCACAAAAGTGGAGCTCTCAGTCTGCGGTGCTAACCTGCTGGACCGCGACGTAGCATCAAAATCAGACCCATTCTGTGTTCTTTTCCATGATGTGGACGGCAATTGGGTGGAGCTGGCTCGAACAGAGACGGCTATTAATAACCTGAATCCAGTATTTGGGGTAAAATTTCAAGTGGATTACCACTTTGAGGAGGTCCAGAAGCTGAAATTTGCCATGTTTGATGAGGACAAATGCAGCTCTCAGCTTTATGAACACGACTTTCTGGGCGAGTTCACCTGCACATTGGGAGTGATCGTGTCAAATAAGAAGCTGCATCGACCACTGATTCTGGCTAATGGCAAGCCGGCAGGGAAGGGGGCCATCACAATAACAGCGCAGGAGTTATCAGACAACAGAATAATCACCCTAACCATGTGTGGGAGGAAGCTGGATAAAAAGGACTTTTTTGGTAAATCAGACCCTTATTTAGAGTTCCACAAACAAGGGGATGATGGGAAATGGATGATGGTTCACAGAACAGAGGTCATTAAGAACACTCTGGATCCTGTATGGAAGCCTTTCACAGTGCCTCTAATCTCACTTTGTAATGGAGATGTGgacagaaacatcaagGTGCTGTGCTACGATTATGACAACGACGGAGGCCATGATTTCATCGGCGAGTTTCAGACCTCCGTGACCAAGATGAGCGAAGCAGAGAACGGAGTGGAGGTTGAGTTTGAATGCATTAATCCCaagaagcagaaaaaaaagagttACAAAAACTCGGGAATCATAATTCTGAAGTCATGCAAGattacaAGAGACTACTCCTTCCTGGACTACATTCTGGGTGGCTGTCAACTCATGTTTACTGTTGGCATCGACTTCACAGCATCCAATGGGAGCCCAAGGGAGCCGTCGTCTCTGCATTATATCAACCCAATGGGCAGCAATGAATATCTGTCGGCCATCTGGGCTGTAGGCCAGATCATCCAAGACTATGACACGGACAAAATGTTTCCTGCGCTTGGATTTGGGGCTCAACTGCCACCCGACTGgaagGTCTCCCATGAATTTGCAATCAACTTTAACCCCACCAACCCTTTCTGCTCAGGTGTGGAGGGGATTGTTCAAGCTTATTCCAACTGCCTGCCTCACATCCGCTTCTACGGTCCCACCAACTTCTCCCCCATCATCAACCATGTGGCCCGCTTCGCTAACCAGGCTCTCCAGCAAGACACAGCTGCACAATACTTCACACTGCTAATCATTACTGACGGCGTGATCAGCGACATGGACGAAACGCGTCACGCCATAGTGCAAGCTGCCAAGCTGCCCATGTCCATCATTATCATCGGAGTGGGCAATGCTGACTTCACCGCCATGGAGTTTCTGGATGGCGACAGCAGCGCTCTGAGATCCTACACAGGAGAGGAGGCGGTCCGAGATATTGTGCAGTTCGTCCCATTCAGGGACTTTCGCAATGCTCCGAAGGAAACTTTAGCCAAATCCGTATTGGCAGAGCTGCCGCAACAGGTCACACAGTATTTCAAACAGAGGAACCTGTCGCCTAGCAACACAATGCCGGAATAGGGGCTGGAGGACTGGAGTTCGCACTGCATGTTGCCAAAACCTGCTAACTGTTTACAAACCTCTCTTGACCAATCCAGTGGAcaaagtgcatgttttttttcctgtacAGAAGTGTTTTTagtacatgtttttatttattgctttatataTCTAAATATTTGACCTATCGATTGAAATGCAACGGCCATTTGTGTGTCTATCACAAAGTATGTACAAGTATTTGGCTGAATGTAACTTTATACTACCgttttctgtgttttaatagaaGCAAATGCTAAAGAGTACATTATATGTAGTGATTTGTATTTAGTGATGGTATGGTGCCATGGTCAAGGTGGTGTTACTTATTTTGTACAGCTTTATTGGTTGTTTATGTTCCACTCAGGTCAATAAATTTCATTTGAGAAAATGATGAGCGGTGCTCTCATCGCGTGATGCACAGACGCATTGATTCAGGAACTGAGGCTGATTACAGCTTTAGTTGTGAAAATCGCTGCAGGTTGTCAGTGAGTCACAACAACACCTTCAGATAACACTGTTTGATCATGTGCTGCCGTCTTTTTAGAGCATGCAGGATTGATCGCTTTGAGCAGTTTGCAATGTTTGATTTGAGTTAAAGTAAAAGAATGAAATACAATTTTTATACTTTGATGACCCTTAACGGCTGATCATCTTAAGCTTACCCACAGACTGTAGaaaagtatatttagtgacacttttgttttttatttgcatcATCCTTTTACACTGTTTTGTATCTGCTAAAGATAACCAAGCAAACGTGATCAATTAACCCGTGAAACTCTCGCCGTACATGTATACTGCTGGTTCTGTGTGCGCGCGAACTGTCAACACTCACACAGACAATCTCACATGctttgcagacccacagagatgcgCCTTTTGGGGACTTAAACGATGcgtttacctttttatttaagcCTGATTTACTGTTTCTTGGCTTCGAAGTGCACACACAGCCgcgagagaaacattaaaaaatacattctttAATCTCAACGACTCAGAAAAACGAAATGACATCTAAACTGGCCGCAAAATATGTGTGCACTATTAAACATGTTTTATCAACTCATTTGTAATCTAAGTAATCCAcactttttaattattatcattatttagatattgtctgttttttttctgtttatttctcatttgctgcatattttatttatttgatagttaaaattttacatattttatacatatttaaaatctttggtaatactatacaaaaacacatgccaataaagcaacttgaacttgaaatagaaaagagagaaagaaagagccaGCAGAAGCAGCAGCTTTTACCTGTCAGCGCACATAAAaataagagaaatagtggatttctttgggtgaagcagtggcgcagtaggtagtgctgttgcctcacagcaagaaggtcgctggtttgagcctcagctcagttggcgtttagTAGTTAATTGTGGAGAGCTGCTCCACTCTGTGAG
>TCONS_00025418
GCGCGGGAAGCACTTTCTTCCTCTTTAACGTCGTTTACCATCTGATAAATCATAACTGGCATATATTATTATCTGGATGGATAGTGTAATCAACCCACAGACATTTTGAAGCGCACAGCTGCTGCCACATTACTACAAATAACGACAGAAGACGCTGAAGAAAAGTAAGGCTGCGCATTGCTTCGAGAGGGTGTAGGAGAGGAGGTACTCCCTTCTCCATGGCCTATACTCTGGGCTCGGGGCCCGATGTGGGTCCTGCATTAGGGCCCCAGCACTGCGTCACAAAAGTGGAGCTCTCAGTCTGCGGTGCTAACCTGCTGGACCGCGACGTAGCATCAAAATCAGACCCATTCTGTGTTCTTTTCCATGATGTGGACGGCAATTGGGTGGAGCTGGCTCGAACAGAGACGGCTATTAATAACCTGAATCCAGTATTTGGGGTAAAATTTCAAGTGGATTACCACTTTGAGGAGGTCCAGAAGCTGAAATTTGCCATGTTTGATGAGGACAAATGCAGCTCTCAGCTTTATGAACACGACTTTCTGGGCGAGTTCACCTGCACATTGGGAGTGATCGTGTCAAATAAGAAGCTGCATCGACCACTGATTCTGG
>TCONS_00025419
ACAAACGCAAAGATGCCATTTTGGGATTCAAACTTAGGGTGTAGGAGAGGAGGTACTCCCTTCTCCATGGCCTATACTCTGGGCTCGGGGCCCGATGTGGGTCCTGCATTAGGGCCCCAGCACTGCGTCACAAAAGTGGAGCTCTCAGTCTGCGGTGCTAACCTGCTGGACCGCGACGTAGCATCAAAATCAGACCCATTCTGTGTTCTTTTCCATGATGTGGACGGCAATTGGGTGGAGCTGGCTCGAACAGAGACGGCTATTAATAACCTGAATCCAGTATTTGGGGTAAAATTTCAAGTGGATTACCACTTTGAGGAGGTCCAGAAGCTGAAATTTGCCATGTTTGATGAGGACAAATGCAGCTCTCAGCTTTATGAACACGACTTTCTGGGCGAGTTCACCTGCACATTGGGAGTGATCGTGTCAAATAAGAAGCTGCATCGACCACTGATTCTGGCTAATGGCAAGCCGGCAGGGAAGGGGGCCATCACAATAACAGCGCAGGAGTTATCAGACAACAGAATAATCACCCTAACCATGTGTGGGAGGAAGCTGGATAAAAAGGACTTTTTTGGTAAATCAGACCCTTATTTAGAGTTCCACAAACAAGGGGATGATGGGAAATGGATGATGGTTCACAGAACAGAGGTCATTAAGAACACTCTGGATCCTGTATGGAAGCCTTTCACAGTGCCTCTAATCTCACTTTGTAATGGAGATGTGgacagaaacatcaagGTGCTGTGCTACGATTATGACAACGACGGAGGCCATGATTTCATCGGCGAGTTTCAGACCTCCGTGACCAAGATGAGCGAAGCAGAGAACGGAGTGGAGGTTGAGTTTGAATGCATTAATCCCaagaagcagaaaaaaaagagttACAAAAACTCGGGAATCATAATTCTGAAGTCATGCAAGattacaAGAGACTACTCCTTCCTGGACTACATTCTGGGTGGCTGTCAACTCATGTTTACTGTTGGCATCGACTTCACAGCATCCAATGGGAGCCCAAGGGAGCCGTCGTCTCTGCATTATATCAACCCAATGGGCAGCAATGAATATCTGTCGGCCATCTGGGCTGTAGGCCAGATCATCCAAGACTATGACACGGACAAAATGTTTCCTGCGCTTGGATTTGGGGCTCAACTGCCACCCGACTGgaagGTCTCCCATGAATTTGCAATCAACTTTAACCCCACCAACCCTTTCTGCTCAGGTGTGGAGGGGATTGTTCAAGCTTATTCCAACTGCCTGCCTCACATCCGCTTCTACGGTCCCACCAACTTCTCCCCCATCATCAACCATGTGGCCCGCTTCGCTAACCAGGCTCTCCAGCAAGACACAGCTGCACAATACTTCACACTGCTAATCATTACTGACGGCGTGATCAGCGACATGGACGAAACGCGTCACGCCATAGTGCAAGCTGCCAAGCTGCCCATGTCCATCATTATCATCGGAGTGGGCAATGCTGACTTCACCGCCATGGAGTTTCTGGATGGCGACAGCAGCGCTCTGAGATCCTACACAGGAGAGGAGGCGGTCCGAGATATTGTGCAGTTCGTCCCATTCAGGGACTTTCGCAATGCTCCGAAGGAAACTTTAGCCAAATCCGTATTGGCAGAGCTGCCGCAACAGGTCACACAGTATTTCAAACAGAGGAACCTGTCGCCTAGCAACACAATGCCGGAATAGGGGCTGGAGGACTGGAGTTCGCACTGCATGTTGCCAAAACCTGCTAACTGTTTACAAACCTCTCTTGACCAATCCAGTGGAcaaagtgcatgttttttttcctgtacAGAAGTGTTTTTagtacatgtttttatttattgctttatataTCTAAATATTTGACCTATCGATTGAAATGCAACGGCCATTTGTGTGTCTATCACAAAGTATGTACAAGTATTTGGCTGAATGTAACTTTATACTACCgttttctgtgttttaatagaaGCAAATGCTAAAGAGTACATTATATGTAGTGATTTGTATTTAGTGATGGTATGGTGCCATGGTCAAGGTGGTGTTACTTATTTTGTACAGCTTTATTGGTTGTTTATGTTCCACTCAGGTCAATAAATTTCATTTGAGAAAATGA

Function

symbol description
cpne2 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE2 (copine 2).

GO:

id name namespace
GO:0071277 cellular response to calcium ion biological_process
GO:0005886 plasma membrane cellular_component
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7896 Predicted to enable calcium-dependent phospholipid binding activity. Predicted to be involved in cellular response to calcium ion. Predicted to be active in plasma membrane. Orthologous to human CPNE2 (copine 2).

Ensembl:

ensembl_id ENSDARG00000007753

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025417 False 3596 mRNA 0.44 16 17660158 17704546
TCONS_00025418 False 612 mRNA 0.48 4 17660402 17672543
TCONS_00025419 True 2116 mRNA 0.47 16 17663898 17703462

Neighbor

gene id symbol gene type direction distance location
XLOC_012726 nlrc5 coding upstream 2356 17624295 ~ 17657802 (+)
XLOC_012725 herpud1 coding upstream 38332 17600570 ~ 17621826 (+)
XLOC_012724 slc12a3 coding upstream 61403 17583479 ~ 17598755 (+)
XLOC_012723 nup93 coding upstream 79636 17537311 ~ 17580522 (+)
XLOC_012722 mt2 coding upstream 124179 17534627 ~ 17535979 (+)
XLOC_012729 rspry1 coding downstream 20864 17725410 ~ 17751843 (+)
XLOC_012730 si:ch211-216l23.2 coding downstream 49964 17754510 ~ 17775588 (+)
XLOC_012731 ZNF423 coding downstream 82002 17786548 ~ 17997474 (+)
XLOC_012732 si:ch211-212o1.2 coding downstream 296149 18000695 ~ 18060544 (+)
XLOC_012733 cbln1 coding downstream 399689 18104235 ~ 18110032 (+)
XLOC_012719 NA non-coding upstream 176934 17473975 ~ 17483224 (+)
XLOC_012716 NA non-coding upstream 480081 17178493 ~ 17180077 (+)
XLOC_012714 BX950194.1 non-coding upstream 586137 17072075 ~ 17074021 (+)
XLOC_012712 NA non-coding upstream 670441 16986090 ~ 16989717 (+)
XLOC_012711 CR925798.1 non-coding upstream 677092 16978628 ~ 16983066 (+)
XLOC_012734 NA non-coding downstream 408497 18113043 ~ 18379358 (+)
XLOC_012735 BX649612.2 non-coding downstream 546953 18251499 ~ 18251615 (+)
XLOC_012739 NA non-coding downstream 971127 18675673 ~ 18676884 (+)
XLOC_012740 NA non-coding downstream 1004343 18708889 ~ 18710155 (+)
XLOC_012741 BX649641.6 non-coding downstream 1021432 18725978 ~ 18726093 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_05451720_05473944 CPNE2 coding CI01000013 null 5451314 ~ 5473944 (-)