XLOC_012710 (si:ch211-242e8.1)


Basic Information

Item Value
gene id XLOC_012710
gene name si:ch211-242e8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16960966 ~ 16971684 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025377
CCTCAATGAGCCCAAACCTGCCCATGAACACATCTGATCCAGCCATGGATGAGCAATCAGTCAGTCCAGAACATCAGACTAAAGCTGCAGATCCTGCCAGCAACTATACAGCCTCAATGAGCCCCAATCTGTTAGTGAGCACCTCTGATCCAGAACCAGATGAACAATCAATCAACCCAGAACATCAGACTGAAGCTGCAGACCCAGCCAACAAGCACACAGGTGAGAAAGATGCATTACAAACCAAAATAGCTCACAGTTGATTACAAATAAAAATTTCTCTGTTACAATATATTGTAGTCAGCATCTGAAGTGGATTAAAACCTTTAATCAAAGTATTAAAACTACTGAACAACATATAAAAATGACCACAGTATCTTGTTGTGTATCTTGTATGAACTGATTATCACTTACTCAAATCCTCACAGCCCCAATGAGCCCCAGTCTGCTTATGACCACCTCTGATCCAGGCTCTGATGAGCACACAATCAATCCATTTCATCACACTGAACCAGCAGATCTGCCCAGCATCAACACAGCCTCAATGAGCCCCATTCTGCTCATGCCAACCTTTGATCCAACCGATGACCAGCAATCCATCAATCCAGAACTTCAGACTGAACCTACAGATCTACTCATCAGCCATGACACAGCTTCAGTGAGCTCCATTCTGCTCATGACCACTTCTGAAGCGAGTACTACATCTGATACAACAACAACTACTCCAAAACTGAAGGACTTCACAGATCCACCTAGAAACAACAACACGGGACTTGTGTGTATTTCTGTGCTTCCTCCACGACGGGGTTCGTACTACGTGGAGCACGGGACAGGGGTGTCTGTGGGCTCAATGCTTGTGTTCTGGTGTAAGGAAGGCTACCAGCTGGTTGGTCATGAGAAAATCACATGCATCCTGCATTCAGGCGTCCCTCGATGGAGCAACTACCTGCCAGTCTGTGAGAgtaTCCCTCGGCCAAATGACCAGGGTCTGCGCATTGCTTTACTGGTGTCAGTAGTAAGCGGGGTGGTCATCCTCGTCATGACCGTCTGCTTCATCGTATGCTGTTGTCAAGAGCACATTAGCAAAAAGAAGGAAAAGCATCGCACAGGCAGGAGCAGGAGAAGAGAAACACGGAGCTCCAGGTCTCGGAGAAGCCCGTCCTGGTTGGAAAGAGAGCATCTTGACTGGGAAGCATTTCCTCCGCCAAAACTTTTCAGTCTGTCCCAGCGTCTCGACCGACCGCTGCCTCCTGGTAGTCCTGTTTATTCAGAGGTTATCAGATCCTATGAGAACAGAGGCTACGAGCGGAGTCAGGAGAGTTTGCTGAGAAGCCCTAATACTTCCTACCCAACATACCCCGCCAACAGCCAGATCTACCCAGCTCTCGTTTTCCAGAGGGTTCAAACTGAGCCAAACCCCTCGAGTTCTTCTACCAACCCAGTTTACGTACAGATTGCTAcacctcccaaaaacaaaacCCATCACGCCGCTTCTGTCACTCACCCATAAATACAACAATTAGTCCATTTTCTCATCAGCAGCACTGAATGTGGACAAGACAATACAGAAAACACTGGACAACTATGAGGGGCAGAGTCAAACCAGAAGCACTTTGATATTTTCAATGGTTAAGATGTCTTTTAATATTTGCTATGTTGTAAATATTCCATTTTGGGGTGATCCTCCTGAGTATTATAACAGCACTAAAGATACCCAACCAAATTGTAAATAGAGGTTTTGATGATGTTGTAGAAAAGTAAAACCAAACATTAACCAAAATCCTTTTGTTTTGCACAGGAATTTTGCTTAAAATGGCCAACTACCACTCATTTTCATTATCTTATATTCATAATGTACTGTGAAAATGTAGTATATGGGTCAAAGATGAAACATATTTTGGCATCTACATCTAATTAAATTTACCTGAAGTGATTTTATAAAAACATGATGCATATTAAATGCATGTAAAGTgtactttattgcatttttaaatactttcGTGAAACTGAACATTCAAAATCATCGTTATGAATAACAAGATTTATTTAAGGGGTacttcagaaaaaacaaaacaaaaagcgctctggggtaagttcaaatgtatggtcggtgctctttgggtaagggattcatcaaatctgcaacaagaatcagtccaaggcactcgagtaaagtgaaaaaattaaaaagcctttattcacatggctagaggatctagccatgtgaataaaggctttttaattttttcactttactcgagtgccttggactgatttatTTAAGGGGTATTTAAgctatagggctctattttaacgatctacaggcgcaaagtctgaagcgcattaagggcgtgtctgaatccacttttgctattttatagatggaaaaatatgctctgcaccctgacacatggtctaacagggttgtgcttattctcttaatgagttatagataTCTGTGAAtactttttgctatttctgtgaagaattttgtgaaaaaaaaatctgtgcatTCATGCGGAATGATTTCgggagtattgtaactaaaaacattatatatgaaataaaaaaataacaacttttcaactttttacaatgcaaatccagttagaaCAACTACCTACTACCTACTCTAttctaaataaatcatatgaacatttccatattagtcaataataatactgaaattaatttaaaaactaaattaatataaatttacacacatttacaaaagtaaataaatagactcaacgatgggctaaaaatctgtggatttctgtgcatgcagattccgtgtgggcctagttatagatgtgttttgagcataacatgcattaaaccaatcaaagtctcatcttccattcgtAAACTTGCTAAATAAACAACGTGATGCAAAACGTAAAAATTATGGTTGTGCTGGTCTAAatatagcaacaaatcacgccaaacacgtcttgcgccttattgcgccgggtgtatgataaggcccataGTATCACTCATACACAAATGATGGTAAAAAAGTATAACTTGTGCTcaggaaaaatgaataaattaaacttCTAGATACATTCTAATGTACAGGGTAAACATAACATTCAAAGCTGTATTatgctttttatttcttttgaggCATTAAAACCTTTTGTCTTTGACCCATAAACGTAAATTGAGCCATTTGTTAGTTtaaaattttactgtaaaacttgCACTTTAAATGCACTGATTCATTTGTAATAAATTGGTGTTTCAGTCTTTTTCCTTGTGCCTTTATTGAGTCCAGATGCTTTTGTTGATTTGGGTAAAATTTGCTATATGGTTTTTTTCTAAACCAGAACATATGGAGAAATATGGATTTTCATTGGGTGATAGACATACACTCAATGACCCAACACAGAAATTCAAATCATTTGAAATAATTTACATTGACACAACTGAATAAGGACTTATACGTTTAAGATTTGTCAAAAAGTAAGAAGGAAAAAGAAGTTGATGTCAGAGCCAGAAAAGGTCAGTTTATCTCTTAACATTTATATGTTTTGATCATATTAT
>TCONS_00025378
ATGAGCCCAAACCTGCCCATGAACACATCTGATCCAGCCATGGATGAGCAATCAGTCAGTCCAGAACATCAGACTAAAGCTGCAGATCCTGCCAGCAACTATACAGCCTCAATGAGCCCCAATCTGTTAGTGAGCACCTCTGATCCAGAACCAGATGAACAATCAATCAACCCAGAACATCAGACTGAAGCTGCAGACCCAGCCAACAAGCACACAGCCCCAATGAGCCCCAGTCTGCTTATGACCACCTCTGATCCAGGCTCTGATGAGCACACAATCAATCCATTTCATCACACTGAACCAGCAGATCTGCCCAGCATCAACACAGCCTCAATGAGCCCCATTCTGCTCATGCCAACCTTTGATCCAACCGATGACCAGCAATCCATCAATCCAGAACTTCAGACTGAACCTACAGATCTACTCATCAGCCATGACACAGCTTCAGTGAGCTCCATTCTGCTCATGACCACTTCTGAAGCGAGTACTACATCTGATACAACAACAACTACTCCAAAACTGAAGGACTTCACAGATCCACCTAGAAACAACAACACGGGACTTGTGTGTATTTCTGTGCTTCCTCCACGACGGGGTTCGTACTACGTGGAGCACGGGACAGGGGTGTCTGTGGGCTCAATGCTTGTGTTCTGGTGTAAGGAAGGCTACCAGCTGGTTGGTCATGAGAAAATCACATGCATCCTGCATTCAGGCGTCCCTCGATGGAGCAACTACCTGCCAGTCTGTGAGAgtaTCCCTCGGCCAAATGACCAGGGTCTGCGCATTGCTTTACTGGTGTCAGTAGTAAGCGGGGTGGTCATCCTCGTCATGACCGTCTGCTTCATCGTATGCTGTTGTCAAGAGCACATTAGCAAAAAGAAGGAAAAGCATCGCACAGGCAGGAGCAGGAGAAGAGAAACACGGAGCTCCAGGTCTCGGAGAAGCCCGTCCTGGTTGGAAAGAGAGCATCTTGACTGGGAAGCATTTCCTCCGCCAAAACTTTTCAGTCTGTCCCAGCGTCTCGACCGACCGCTGCCTCCTGGTAGTCCTGTTTATTCAGAGGTTATCAGATCCTATGAGAACAGAGGCTACGAGCGGAGTCAGGAGAGTTTGCTGAGAAGCCCTAATACTTCCTACCCAACATACCCCGCCAACAGCCAGATCTACCCAGCTCTCGTTTTCCAGAGGGTTCAAACTGAGCCAAACCCCTCGAGTTCTTCTACCAACCCAGTTTACGTACAGATTGCTAcacctcccaaaaacaaaacCCATCACGCCGCTTCTGTCACTCACCCATAAATACAACAATTAGTCCATTTTCTCATCAGCAGCACTGAATGTGGACAAGACAATACAGAAAACACTGGACAACTATGAGGGGCAGAGTCAAACCAGAAGCACTTTGATATTTTCAATGGTTAAGATGTCTTTTAATATTTGCTATGTTGTAAATATTCCATTTTGGGGTGATCCTCCTGAGTATTATAACAGCACTAAAGATACCCAACCAAATTGTAAATAGAGGTTTTGATGATGTTGTAGAAAAGTAAAACCAAACATTAACCAAAATCCTTTTGTTTTGCACAGGAATTTTGCTTAAAATGGCCAACTACCACTCATTTTCATTATCTTATATTCATAATGTACTGTGAAAATGTAGTATATGGGTCAAAGATGAAACATATTTTGGCATCTACATCTAATTAAATTTACCTGAAGTGATTTTATAAAAACATGATGCATATTAAATGCATGTAAAGTgtactttattgcatttttaaatactttcGTGAAACTGAACATTCAAAATCATCGTTATGAATAACAAGATTTATTTAAGGGGTacttcagaaaaaacaaaacaaaaagcgctctggggtaagttcaaatgtatggtcggtgctctttgggtaagggattcatcaaatctgcaacaagaatcagtccaaggcactcgagtaaagtgaaaaaattaaaaagcctttattcacatggctagaggatctagccatgtgaataaaggctttttaattttttcactttactcgagtgccttggactgatttatTTAAGGGGTATTTAAgctatagggctctattttaacgatctacaggcgcaaagtctgaagcgcattaagggcgtgtctgaatccacttttgctattttatagatggaaaaatatgctctgcaccctgacacatggtctaacagggttgtgcttattctcttaatgagttatagataTCTGTGAAtactttttgctatttctgtgaagaattttgtgaaaaaaaaatctgtgcatTCATGCGGAATGATTTCgggagtattgtaactaaaaacattatatatgaaataaaaaaataacaacttttcaactttttacaatgcaaatccagttagaaCAACTACCTACTACCTACTCTAttctaaataaatcatatgaacatttccatattagtcaataataatactgaaattaatttaaaaactaaattaatataaatttacacacatttacaaaagtaaataaatagactcaacgatgggctaaaaatctgtggatttctgtgcatgcagattccgtgtgggcctagttatagatgtgttttgagcataacatgcattaaaccaatcaaagtctcatcttccattcgtAAACTTGCTAAATAAACAACGTGATGCAAAACGTAAAAATTATGGTTGTGCTGGTCTAAatatagcaacaaatcacgccaaacacgtcttgcgccttattgcgccgggtgtatgataaggcccataGTATCACTCATACACAAATGATGGTAAAAAAGTATAACTTGTGCTcaggaaaaatgaataaattaaacttCTAGATACATTCTAATGTACAGGGTAAACATAACATTCAAAGCTGTATTatgctttttatttcttttgaggCATTAAAACCTTTTGTCTTTGACCCATAAACGTAAATTGAGCCATTTGTTAGTTtaaaattttactgtaaaacttgCACTTTAAATGCACTGATTCATTTGTAATAAATTGGTGTTTCAGTCTTTTTCCTTGTGCCTTTATTGAGTCCAGATGCTTTTGTTGATTTGGGTAAAATTTGCTATATGGTTTTTTTCTAAACCAGAACATATGGAGAAATATGGATTTTCATTGGGTGATAGACATACACTCAATGACCCAACACAGAAATTCAAATCATTTGAAATAATTTACATTGACACAACTGAATAAGGACTTATACGTTTAAGATTTGTCAAAAAGTAAGAAGGAAAAAGAAGTTGATGTCAGAGCCAGAAAAGGTCAGTTTATCTCTTAACATTTATATGTTTTGATCATATTAT
>TCONS_00025379
ACACAGCTTCAGTGAGCTCCATTCTGCTCATGACCACTTCTGAAGCGAGTACTACATCTGATACAACAACAACTACTCCAAAACTGAAGGACTTCACAGATCCACCTAGAAACAACAACACGGGACTTGTGTGTATTTCTGTGCTTCCTCCACGACGGGGTTCGTACTACGTGGAGCACGGGACAGGGGTGTCTGTGGGCTCAATGCTTGTGTTCTGGTGTAAGGAAGGCTACCAGCTGGTTGGTCATGAGAAAATCACATGCATCCTGCATTCAGGCGTCCCTCGATGGAGCAACTACCTGCCAGTCTGTGAGAgtaTCCCTCGGCCAAATGACCAGGGTCTGCGCATTGCTTTACTGGTGTCAGTAGTAAGCGGGGTGGTCATCCTCGTCATGACCGTCTGCTTCATCGTATGCTGTTGTCAAGAGCACATTAGCAAAAAGAAGGAAAAGCATCGCACAGGCAGGAGCAG

Function

symbol description
si:ch211-242e8.1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3).

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-600 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3).

Ensembl:

ensembl_id ENSDARG00000069038

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025377 False 3552 mRNA 0.39 8 16960966 16971684
TCONS_00025378 False 3341 mRNA 0.39 9 16960971 16971684
TCONS_00025379 True 472 mRNA 0.51 3 16963881 16967042

Neighbor

gene id symbol gene type direction distance location
XLOC_012708 si:dkey-8l13.5 coding upstream 10185 16940440 ~ 16950781 (+)
XLOC_012709 NA coding upstream 19119 16941462 ~ 16941847 (+)
XLOC_012707 NA coding upstream 98547 16798755 ~ 16862419 (+)
XLOC_012706 rnf141 coding upstream 204822 16749091 ~ 16756144 (+)
XLOC_012705 lyve1b coding upstream 212290 16744307 ~ 16748676 (+)
XLOC_012711 CR925798.1 coding downstream 6944 16978628 ~ 16983066 (+)
XLOC_012712 NA coding downstream 14406 16986090 ~ 16989717 (+)
XLOC_012713 chtf8 coding downstream 49283 17020967 ~ 17024878 (+)
XLOC_012714 BX950194.1 coding downstream 100391 17072075 ~ 17074021 (+)
XLOC_012715 trhr2 coding downstream 180232 17151916 ~ 17173920 (+)
XLOC_012704 NA non-coding upstream 238984 16721799 ~ 16721982 (+)
XLOC_012700 NA non-coding upstream 645155 16310121 ~ 16315811 (+)
XLOC_012689 CR536616.1 non-coding upstream 1248421 15712429 ~ 15712545 (+)
XLOC_012716 NA non-coding downstream 206809 17178493 ~ 17180077 (+)
XLOC_012719 NA non-coding downstream 502291 17473975 ~ 17483224 (+)

Expression


Co-expression Network