RNA id: TCONS_00025379


Basic Information

Item Value
RNA id TCONS_00025379
length 472
RNA type mRNA
GC content 0.51
exon number 3
gene id XLOC_012710
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16960966 ~ 16971684 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACAGCTTCAGTGAGCTCCATTCTGCTCATGACCACTTCTGAAGCGAGTACTACATCTGATACAACAACAACTACTCCAAAACTGAAGGACTTCACAGATCCACCTAGAAACAACAACACGGGACTTGTGTGTATTTCTGTGCTTCCTCCACGACGGGGTTCGTACTACGTGGAGCACGGGACAGGGGTGTCTGTGGGCTCAATGCTTGTGTTCTGGTGTAAGGAAGGCTACCAGCTGGTTGGTCATGAGAAAATCACATGCATCCTGCATTCAGGCGTCCCTCGATGGAGCAACTACCTGCCAGTCTGTGAGAgtaTCCCTCGGCCAAATGACCAGGGTCTGCGCATTGCTTTACTGGTGTCAGTAGTAAGCGGGGTGGTCATCCTCGTCATGACCGTCTGCTTCATCGTATGCTGTTGTCAAGAGCACATTAGCAAAAAGAAGGAAAAGCATCGCACAGGCAGGAGCAG

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-600 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human SUSD3 (sushi domain containing 3).

Ensembl:

ensembl_id ENSDART00000147583

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00026886 lncRNA upstream 22034 16941462 ~ 16941847 (+) True XLOC_012709
TCONS_00027079 lncRNA upstream 101462 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA upstream 127816 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00027078 lncRNA upstream 648070 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00025361 lncRNA upstream 770084 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00027081 lncRNA downstream 19048 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00027082 lncRNA downstream 211451 17178493 ~ 17180077 (+) True XLOC_012716
TCONS_00027083 lncRNA downstream 506933 17473975 ~ 17483224 (+) True XLOC_012719
TCONS_00027084 lncRNA downstream 509333 17476375 ~ 17476883 (+) True XLOC_012720
TCONS_00025404 lncRNA downstream 616441 17583483 ~ 17585751 (+) True XLOC_012724
TCONS_00025375 mRNA upstream 13100 16940440 ~ 16950781 (+) False XLOC_012708
TCONS_00025376 mRNA upstream 13338 16943911 ~ 16950543 (+) True XLOC_012708
TCONS_00025373 mRNA upstream 207737 16749091 ~ 16756144 (+) False XLOC_012706
TCONS_00025374 mRNA upstream 211019 16750080 ~ 16752862 (+) True XLOC_012706
TCONS_00025371 mRNA upstream 215205 16744307 ~ 16748676 (+) False XLOC_012705
TCONS_00025383 mRNA downstream 19453 16986495 ~ 16987206 (+) False XLOC_012712
TCONS_00025384 mRNA downstream 19861 16986903 ~ 16989717 (+) True XLOC_012712
TCONS_00025385 mRNA downstream 53925 17020967 ~ 17023972 (+) False XLOC_012713
TCONS_00025386 mRNA downstream 54349 17021391 ~ 17024878 (+) True XLOC_012713
TCONS_00025388 mRNA downstream 184874 17151916 ~ 17173920 (+) False XLOC_012715
TCONS_00025369 other upstream 241899 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025367 other upstream 244691 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025358 other upstream 823533 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025343 other upstream 1251336 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025333 other upstream 1967176 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025380 other downstream 11586 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other downstream 11674 16978716 ~ 16983066 (+) False XLOC_012711
TCONS_00025382 other downstream 12523 16979565 ~ 16983066 (+) True XLOC_012711
TCONS_00025387 other downstream 105033 17072075 ~ 17074021 (+) True XLOC_012714
TCONS_00025397 other downstream 570269 17537311 ~ 17566512 (+) False XLOC_012723

Expression Profile

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