RNA id: TCONS_00025387



Basic Information


Item Value
RNA id TCONS_00025387
length 525
RNA type processed_transcript
GC content 0.55
exon number 2
gene id XLOC_012714
representative True

Chromosome Information


Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17072075 ~ 17074021 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


CTGCTCTGGATCCTGAAGATCCCTACAGCAGAATGAAGGCCGCTGGGGTCGATAAGCCAACTGACATAGTGCCGCCATAATATCACCCAGATGGCGTGTAAAAACAGGAGTTGCCAGAGACGAAAGTGCAGACACCTCCAGCAGCACATTAGTCGTGACAAGAAGTCGCCTTTCACCCGCAGGGGCCACATCAAGTCGGACTGCCCCTTCTACAGCTGCCCCAAAAGCCGACCTCAGTCCCAATGCTACCCCGACACCGGGAGCCAAATATGGGCAGAGACCCAGAGTGACCACAAACTGCAGCACAGCACCCAGTGTCTTCTGCTGGGCCACACTGAGAACATCTGGGGGGAGTGGAGGAGCTGCTTCAGGGGTTGCCAGATTTGGTGCCGCAGGATGTTTGTGAAAGGCATCCAGGAGGCGCTTCAGGTGTCGAGCCAGGCAAAGCAGCAAGAGAAGACATTCCTGGACAAAGCTCCATGTTATGTCCTCAGTGTCCCTGCAGAACCATGTGACGACTCTTCT

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000138502

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00027081 lncRNA upstream 83861 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00026886 lncRNA upstream 130228 16941462 ~ 16941847 (+) True XLOC_012709
TCONS_00027079 lncRNA upstream 209656 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA upstream 236010 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00027078 lncRNA upstream 756264 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00027082 lncRNA downstream 104472 17178493 ~ 17180077 (+) True XLOC_012716
TCONS_00027083 lncRNA downstream 399954 17473975 ~ 17483224 (+) True XLOC_012719
TCONS_00027084 lncRNA downstream 402354 17476375 ~ 17476883 (+) True XLOC_012720
TCONS_00025404 lncRNA downstream 509462 17583483 ~ 17585751 (+) True XLOC_012724
TCONS_00027085 lncRNA downstream 1039022 18113043 ~ 18165017 (+) False XLOC_012734
TCONS_00025386 mRNA upstream 47197 17021391 ~ 17024878 (+) True XLOC_012713
TCONS_00025385 mRNA upstream 48103 17020967 ~ 17023972 (+) False XLOC_012713
TCONS_00025384 mRNA upstream 82358 16986903 ~ 16989717 (+) True XLOC_012712
TCONS_00025383 mRNA upstream 84869 16986495 ~ 16987206 (+) False XLOC_012712
TCONS_00025377 mRNA upstream 100391 16960966 ~ 16971684 (+) False XLOC_012710
TCONS_00025388 mRNA downstream 77895 17151916 ~ 17173920 (+) False XLOC_012715
TCONS_00025389 mRNA downstream 81875 17155896 ~ 17173920 (+) True XLOC_012715
TCONS_00025390 mRNA downstream 344233 17418254 ~ 17426306 (+) True XLOC_012717
TCONS_00025391 mRNA downstream 354237 17428258 ~ 17461796 (+) False XLOC_012718
TCONS_00025392 mRNA downstream 354485 17428506 ~ 17461665 (+) True XLOC_012718
TCONS_00025380 other upstream 89009 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other upstream 89009 16978716 ~ 16983066 (+) False XLOC_012711
TCONS_00025382 other upstream 89009 16979565 ~ 16983066 (+) True XLOC_012711
TCONS_00025369 other upstream 350093 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025367 other upstream 352885 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025397 other downstream 463290 17537311 ~ 17566512 (+) False XLOC_012723
TCONS_00025401 other downstream 506138 17580159 ~ 17580245 (+) True XLOC_012723
TCONS_00025408 other downstream 526740 17600761 ~ 17608571 (+) False XLOC_012725
TCONS_00025409 other downstream 526925 17600946 ~ 17605795 (+) False XLOC_012725
TCONS_00025420 other downstream 601319 17675340 ~ 17675455 (+) True XLOC_012728

Expression Profile


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