RNA id: TCONS_00025390


Basic Information

Item Value
RNA id TCONS_00025390
length 1748
RNA type mRNA
GC content 0.45
exon number 13
gene id XLOC_012717
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17418254 ~ 17426306 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTAGAGTTTCTGTCAGTCTTTTGTGAAAAGCAGCCATGATAAAAGACGTTTTGCTTTGCTTGTGCTTGTTTGTGGCACCCATCTGGTGCGCCCCTGTAAAGGAAGATTCTGGACCAGTAGTTGTTTTGAAGCATGGCAGTGTCCGTGGGCAATATGTGAAAGCTAAAGGATCTCCAGCTGTTGTGGAGCAATATTTGGGCATTCCTTTTGCCCAGCCGCCTGTCGGCCCTCACCGTCTAGCAGCTCCACAGCCTGTACAAGGATGGGAGGGCATAAGAAATGCCACCGAGTATTCTTCCATGTGCCTTCAAGACCCAAATATTGTGCCTAAATATGCAAAATCCATGACGTTGGAATTACCACCTACAGGAGTCTCAGAGGACTGTTTGTATCTGAATGTTTACACTCCATCTCAAAGATCAGAATCAGATAAATTCCCAGTAATGGTTTGGATTCATGGAGGGGCTTTGGTCATAGGTGGAGCTTGCATGTATGACGGAACCCCTCTGGCAGCCTATGAAAAAGTAGTTGTGGTTGTCATTCAGTATCGACTTGGAATATTAGGATACTTAAGCACAGGAGATCAGCATGCGCAAGGAAACTGGGGTTTCCTCGACCAGATCGCAGCTTTACAGTGGGTGCAGCAAAACATTGAGGCTTTCGGAGGAGACCCTCAGTCTGTCACCATAGCTGGAGAGTCTGCAGGAGGAATCAGCGCCTCTTTGCTGACATTGTCACCCATGACCAAGGGTCTGTTTCAGCGGGCCATTTTTCAGAGTGGGGTAGCAACTGTGAAGGGATACTCCTTCAAAGATCCTTTAACTTATGCCAAGGTAATTGCAAATATTACAGAGTGTGACTTTAGCTCTTCTGAAGTGTTGGTCAAATGCATCAGAGAAATGACTGAGGAACAGATCATCAAAGCGGCTCAAAAGAAATACCGGTTACCTGGAGCAACAGTTGATGGGGAATTTATTAAAGCTCAGCCGGAGGAGATCCTGAAGAGTAAAGATTTTCCGAAAATTCCAATTCTTGTTGGAACAACAAACCATGAATTTGGGTGGACGCTCTCCCACgCCATTCTCCCAAAAGATTGGGCAAAAGGAATGGACGCAAAATCAGCTAAACAAACTCTGGACTTTTTTTACAACGCTGGGGCTTCAGAAGCCAATGGAATCATAGCGGACGAAtactttaaaaatgctaaaactccAGAGGAGATTCGAGACGCATTTACTGAGCTGCTCGGGGATATTATCATGGTGATACCCTCCATCAAAGTTGCGTCTTATCACAGAGATGCCGGAGCGCCTGTCTATATGTATGAGTTCCAGCACGGGCCAAGTATAGCTAATAAATTCAGACCCAGTTTTGTGAAGGCCGACCATGGTGATGAAATTGGATTTATGTTTGGGGCCTGCTTCTGGGATGGTCAGGTGAAAGTTACAGGAACACTCACTGAAGAAGAAAACCAATTATGCAGAACTGTCATGAAATACTGGGCTAACTTTGTTCGTACTGGATCCCCAAATCCCGCTCCAGTGCCCTGGCCTGTTTACGACCAGTCTAATAAGTACTTGAACCTGGGATTGCAGCAAACTGAGGGACAAGGCCTCAAGAAGGACAAGCTGCTCTTTTTCACTGAAGAATTACCTAAAAAACTAGCTGCACTTCATACAGCCTGAATAGTTATTACACCAATAAATGTGATACttctaaaaataaatcaaattcacACATCTTTGTG

Function

GO:

id name namespace
GO:0031514 motile cilium cellular_component
GO:0005615 extracellular space cellular_component
GO:0004771 sterol esterase activity molecular_function
GO:0004806 triglyceride lipase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9563 Predicted to enable carboxylic ester hydrolase activity; mannosyl-oligosaccharide mannosidase activity; and phospholipase activity. Located in motile cilium. Is expressed in liver. Orthologous to several human genes including CES2 (carboxylesterase 2) and CES3 (carboxylesterase 3).

Ensembl:

ensembl_id ENSDART00000140191

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027082 lncRNA upstream 238177 17178493 ~ 17180077 (+) True XLOC_012716
TCONS_00027081 lncRNA upstream 430040 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00026886 lncRNA upstream 476407 16941462 ~ 16941847 (+) True XLOC_012709
TCONS_00027079 lncRNA upstream 555835 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA upstream 582189 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00027083 lncRNA downstream 47669 17473975 ~ 17483224 (+) True XLOC_012719
TCONS_00027084 lncRNA downstream 50069 17476375 ~ 17476883 (+) True XLOC_012720
TCONS_00025404 lncRNA downstream 157177 17583483 ~ 17585751 (+) True XLOC_012724
TCONS_00027085 lncRNA downstream 686737 18113043 ~ 18165017 (+) False XLOC_012734
TCONS_00027087 lncRNA downstream 686737 18113043 ~ 18226851 (+) False XLOC_012734
TCONS_00025388 mRNA upstream 244334 17151916 ~ 17173920 (+) False XLOC_012715
TCONS_00025389 mRNA upstream 244334 17155896 ~ 17173920 (+) True XLOC_012715
TCONS_00025386 mRNA upstream 393376 17021391 ~ 17024878 (+) True XLOC_012713
TCONS_00025385 mRNA upstream 394282 17020967 ~ 17023972 (+) False XLOC_012713
TCONS_00025384 mRNA upstream 428537 16986903 ~ 16989717 (+) True XLOC_012712
TCONS_00025391 mRNA downstream 1952 17428258 ~ 17461796 (+) False XLOC_012718
TCONS_00025392 mRNA downstream 2200 17428506 ~ 17461665 (+) True XLOC_012718
TCONS_00025393 mRNA downstream 48683 17474989 ~ 17476941 (+) False XLOC_012720
TCONS_00025394 mRNA downstream 48688 17474994 ~ 17476155 (+) False XLOC_012720
TCONS_00025395 mRNA downstream 67553 17493859 ~ 17507010 (+) True XLOC_012721
TCONS_00025387 other upstream 344233 17072075 ~ 17074021 (+) True XLOC_012714
TCONS_00025380 other upstream 435188 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other upstream 435188 16978716 ~ 16983066 (+) False XLOC_012711
TCONS_00025382 other upstream 435188 16979565 ~ 16983066 (+) True XLOC_012711
TCONS_00025369 other upstream 696272 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025397 other downstream 111005 17537311 ~ 17566512 (+) False XLOC_012723
TCONS_00025401 other downstream 153853 17580159 ~ 17580245 (+) True XLOC_012723
TCONS_00025408 other downstream 174455 17600761 ~ 17608571 (+) False XLOC_012725
TCONS_00025409 other downstream 174640 17600946 ~ 17605795 (+) False XLOC_012725
TCONS_00025420 other downstream 249034 17675340 ~ 17675455 (+) True XLOC_012728

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_05638498_05647534.mRNA True 1449 mRNA 0.45 11 CI01000013 5638478 ~ 5647534 (-)