XLOC_012721 (C18H16orf70)


Basic Information

Item Value
gene id XLOC_012721
gene name C18H16orf70
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 17493859 ~ 17507010 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025395
ATGCTGGATCTGGAGGTCGTTCCTGAGCGATCTTTGGGAAATGAACAATGGGAATTCGCATTAGGGATGCCATTGGCCCAGGCCATTTCAATATTACAGAAACACTGCCGAATCATCAAAAATGTCCAGGTGCTCTACAGCGAACAAATGCCACTCAGCCACGACCTCATTCTCAACTTGACTCAGGATGGAATTAAACTGCTGTTTGATGCCTGCAATCAGAGACTGAAAGTAATTGAAGTGTACGATTTGACCAAAGTCAAACTAAAATACTGTGGAGTGCATTTTAACTCTCAGGCAATAGCACCTACTATCGAGCAGATTGATCAGTCTTTTGGCGCTACTCATCCAGGAGTCTACAATGCTGCCGAGCAGCTCTTCCATCTGAACTTCAGAGGGCTTTCTTTCTCCTTCCAGCTGGACTCCTGGAGTGAAGCCCCTAAATATGAGCCTAACTTTGCCCATGGCTTGGCCTCCCTGCAGATTCCTCATGGGGCCACTGTCAAACGGATGTACATCTACTCCGGAAACAACCTTCAAGAAACCAAGGCTCCAGCCATGCCTCTGGCCTGTTTTCTTGGTAATGTGTATGCAGAGTGTGTGGAGGTGCTGAGAGATGGAGCAGGACCGCTGGGTCTCAAACTTCGTCTCCTCACTGCAGGATGCGGCCCAGGAGTGCTGGCTGATACTAAAGTGCGAGCCGTAGAGAGAAGCATCTACTTTGGAGATTCCTGTCAGGATGTTTTGAGTGCTCTTGGCTCCCCACATAAGGTCTTCTACAAATCAGAGGACAAAATGAAGATCCATTCACCTTCCCCTCACAAGCAAGTCCCGTCCAAATGTAACGACTACTTCTTTAACTATTATATACTGGGAGTGGATATACTGTTTGACTCAACAACCCACCTGGTCAAAAAATTTGTCCTTCACACCAACTTCCCTGGCCATTACAACTTCAACATATATCATCGCTGTGATTTCAAGATTCCTCTCATCATTAAAAAAGATGGAGCGGATGCTCACAGCGAGGACTGCATTTTGACCACCTACAGCAAATGGGATCAGATTCAGGAGCTGCTGGGACACCCTATGGAAAAACCAGTTGTGCTACACAGGTCATCTTCTGCAAACAACACCAACCCTTTTGGTTCCACGTTTTGTTTTGGACTGCAGAGAATGATATTTGAGGTCATGCAGAACAACCACATAGCTTCAGTGACTCTCTACGGAGCACCACGTCCAAGTAGTCTGGCCCGTGTCGAGCAGAGTACCCACTGAGGAAGCCGCCATGCCCACGGTGCCCGTCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000041560

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025395 True 1307 mRNA 0.48 16 17493859 17507010

Neighbor

gene id symbol gene type direction distance location
XLOC_012719 NA coding upstream 10635 17473975 ~ 17483224 (+)
XLOC_012720 si:dkey-102f14.7 coding upstream 16918 17474989 ~ 17476941 (+)
XLOC_012718 zgc:91860 coding upstream 32063 17428258 ~ 17461796 (+)
XLOC_012717 ces3 coding upstream 67553 17418254 ~ 17426306 (+)
XLOC_012716 NA coding upstream 313782 17178493 ~ 17180077 (+)
XLOC_012722 mt2 coding downstream 27617 17534627 ~ 17535979 (+)
XLOC_012723 nup93 coding downstream 30301 17537311 ~ 17580522 (+)
XLOC_012724 slc12a3 coding downstream 76469 17583479 ~ 17598755 (+)
XLOC_012725 herpud1 coding downstream 93560 17600570 ~ 17621826 (+)
XLOC_012726 nlrc5 coding downstream 117285 17624295 ~ 17657802 (+)
XLOC_012714 BX950194.1 non-coding upstream 419838 17072075 ~ 17074021 (+)
XLOC_012712 NA non-coding upstream 504142 16986090 ~ 16989717 (+)
XLOC_012711 CR925798.1 non-coding upstream 510793 16978628 ~ 16983066 (+)
XLOC_012728 BX470170.1 non-coding downstream 168330 17675340 ~ 17675455 (+)
XLOC_012734 NA non-coding downstream 606033 18113043 ~ 18379358 (+)
XLOC_012735 BX649612.2 non-coding downstream 744489 18251499 ~ 18251615 (+)
XLOC_012739 NA non-coding downstream 1168663 18675673 ~ 18676884 (+)
XLOC_012740 NA non-coding downstream 1201879 18708889 ~ 18710155 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_05592121_05601330 CUNH16ORF70, CLG7H16ORF70, C11H16ORF70, C4H16ORF70, C2H16ORF70, C14H16ORF70, C5H16ORF70, C16H16ORF70, C18H16ORF70, CE2H16ORF70, CLG19H16ORF70, C20H16ORF70 coding CI01000013 null 5592121 ~ 5601330 (-)
bowfin (Amia calva) AMCG00020342 clg19h16orf70,LOC106573725,LOC106560845,LOC105892482,LOC103042166 coding CM030127.1 CM030127.1 16828951 ~ 16841510 (-)