RNA id: TCONS_00025361


Basic Information

Item Value
RNA id TCONS_00025361
length 544
lncRNA type retained_intron
GC content 0.37
exon number 4
gene id XLOC_012698
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16192083 ~ 16218370 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTACTTTGTTTCCAATAAAGGCAGACAGAAAGCGGCATGTGTTTTATATACTTATGAGATGTTTGTATATcgtcattattatatatttgtatttatgctGTCGTGAATTTACTTCAGTTGCAAATCTGCACGTCTATTGTAACAAACAGTTCGTTTCTCCAGGCGGTTTGTTGATTCTTGATCCGCGAGAAATGGATGATATCGAACGGGCAATTGACGAGGAGCTTATGAAATTAAACCTTCACCCTTCTGAAAATGATATAGAGTCAGACGATGACAGCAATGATTTGAATAACGTTAGTAATCTTCTTGTTGAAGGTGAGCTGCCTGACTCAGTGCTCACATATATTGAAGCTTCAAGAAAtcaaatcagtgcttttgaataCTTAATCCTTAAAGATGTGGAAGAAAAGGACATTTCAAGCCAGGAACTGTTTCATCTTAATCACAGTAATAATCCTGCGACTGAACCAGCTTCAGATTTCATAGACGACCCCATCAATTGGAAAGAGAGAgtaATCTCTGAATTACAATTTGGACTTC

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component
GO:0019901 protein kinase binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-235 Predicted to enable protein kinase binding activity. Predicted to be active in cytoplasm. Orthologous to human LRRIQ1 (leucine rich repeats and IQ motif containing 1).

Ensembl:

ensembl_id ENSDART00000135016

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025359 lncRNA upstream 53763 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00027077 lncRNA upstream 735371 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00027076 lncRNA upstream 739466 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027075 lncRNA upstream 742673 15446623 ~ 15449445 (+) True XLOC_012682
TCONS_00027074 lncRNA upstream 751258 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00027078 lncRNA downstream 116324 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00027079 lncRNA downstream 604958 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA downstream 605258 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00026886 lncRNA downstream 747665 16941462 ~ 16941847 (+) True XLOC_012709
TCONS_00027081 lncRNA downstream 792293 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00025357 mRNA upstream 46037 16133595 ~ 16146081 (+) False XLOC_012697
TCONS_00025356 mRNA upstream 61953 16125852 ~ 16130165 (+) True XLOC_012696
TCONS_00025355 mRNA upstream 91893 16053455 ~ 16100225 (+) False XLOC_012695
TCONS_00025354 mRNA upstream 91893 16053455 ~ 16100225 (+) True XLOC_012695
TCONS_00025353 mRNA upstream 149614 15937610 ~ 16042504 (+) True XLOC_012694
TCONS_00025362 mRNA downstream 53009 16246806 ~ 16254746 (+) True XLOC_012699
TCONS_00025363 mRNA downstream 136228 16330025 ~ 16339517 (+) False XLOC_012701
TCONS_00025364 mRNA downstream 136923 16330720 ~ 16339902 (+) True XLOC_012701
TCONS_00025365 mRNA downstream 232469 16426266 ~ 16442814 (+) True XLOC_012702
TCONS_00025366 mRNA downstream 522067 16715864 ~ 16726206 (+) False XLOC_012703
TCONS_00025358 other upstream 51770 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025343 other upstream 479573 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025333 other upstream 1195413 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 1542823 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 2243194 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025367 other downstream 522154 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 528002 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 784831 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other downstream 784919 16978716 ~ 16983066 (+) False XLOC_012711
TCONS_00025382 other downstream 785768 16979565 ~ 16983066 (+) True XLOC_012711

Expression Profile

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