RNA id: TCONS_00027077


Basic Information

Item Value
RNA id TCONS_00027077
length 2750
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_012684
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15453915 ~ 15456747 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttttgaattgtcaaagatatcagaatatttgcaatatttcaactcttacaccctaaacagatctaaactgtgtttcctacaaaaacacaaagcaggttatgtttcacagctgtctttttgttttttcCGCTTCCGaagaagggggtggtggtgggcatagattgtttgctagatgtcttgtctgtggctgttatttacattgtagGTAATGGAACCACAACAGATagaagagggagactcacaagCGGAATGGTGAATATTTATttgaagaacactggagaacatTTGGTTTATTGTTGGAGATCAGTCAGCaagtagagctctgttagtcttgtttttgtcttttgcagattagaCTGGGGCATGTGGAGAAATGGGAATCACACCTCAGGAATGACTGGAAATTGATGGTCAGGAATTTCTTTCAAAAATCAGATTGACAGGTGCATGGATGGAAGTCTTTCCAAGATACAAGAGTGGTGGTTGGTATAGATGGTTACttaggccttgtctgtgtcagatttttctttttcaggtaatagagagagaaagagagcaagcAGGCAGACGAGGAGCCTGTAGGGTTTTGTTGGGGCTTTCTTTGTCTTTTGCAGGTTGAAGTTGAGTAGAAGGACAATCACAAGGGTAAAGTTGGAGATATACTTGAAGACCTAGAGCTTAATAAGCAGATTGGCATGGAGTATGTGGAGAAAGAGGGAAACACACGGATAGGTGCATGGATGGATgaccttccaagaggaagggggtggtggtgggcatagattgttagatagaGTTCTTGTTTGTGGCAGTTATTTACATTGTAGGTAATGGAACCAAAACAGACAGAATCGGGAAACTCACAAGCAGAAAGTGGCTGTTATTTACATTGCAGATGTTATGGGTTTGTGATTGGTTCGTTCTGTTTCCTGGTCTTTGCTTTTTCTTAATAGGTGTCTTATGGTGCAGCAGGTGCGGCTAATCTTCTGGCTTATTTAAGGAGCTTCCAATATGTGTTTGGGAGACTGCTTTGAAGGGTCGTCTTTTCGTTTGACTTCCTTTGACTTGATCACCGcatatattatttttcaattatgtGAACTTTGCTCCTATGTAATTTGTTGTTTTGGACGTCATGTTATGTTAGACATATAGTTTGGTTACTGTGTTACCCCTTTgccctttattttactttatcatTTGGTCTATTTGTaacctttaaatatatttttgcatgtttgtaGTCAAATTCGTTTGGGTTTCCTTCATTTTGTTGTGTGCTTAAGCCGGCATGTAACACAGGTAATGGAACCACAACAGACAGAAGAGGGAGACTGAACTGAAGATGGTGAAtatttatctgaagaacactggagaacatTTGGTTTATTGCTGGAGATCCGCCAGAaagtagagctctgttagtcttgtttttgtcttttgcagattagaCTGGGGCATGTCACACCTCAGTGATGACTGCAAACTGATTAGTTATTTTttgtattgatggatggatggaaagaataatgaatggatggacggctGGTCTGATGGTAAATAGAGGTCCTTCTAAGAGGAAGGGGGTGGaagtgggcatagattgttagatagaTATCTTCTTTGTGGCAGTTATTTAAACTAGTTAATGAACACACAACAGGCTGAAAATGAAGACTCACAAGAGCCTCAGGAGCACAAGACTCACCAGGAGTGTCGCTAGACCCCATTTACAGGGGCACGTGCGAGATTCTATTTTTAAATGGCTCACATTACCAGATAATCTGCGCAGAGTATCGGAGTCGATCAAAGCCCTCGACAAGATTTCATCTCAGAAATTCGTGATCAAAATAAATTTGCCTAAAACTCCTGTAGTCTGAGCTCAGCTTTAgatagttagctagatgtcttgtctgtggcagatgtttctttttcaggtaatcgacacacaacaggcagaagaaggaaactcacaaaGGCAAGGTGATTTATCCAAAGAATGCTGGCGATCATCTTGTGCATTTCTGGAGCTCTGCAAGCACGTAGAGCTCTGTTAGTACTGTCTTTGACTTTTACAGACTAGAGTGCAGCATGTGGAGAcaaataggaatcacacacctcagcaatgactggaaaCTGATGGTCAGGATCATCCTTTAAAAACAAATGGATAtggatggatgtccttccaagaggaagggggtggtggtgggcatagattgttagatgtcCTCTCTGTGGCAGTTATTTAGGTAATGGAACCACAACAGGGAGAAGAAGGAGACATCGGTGGAGATTTATCGAAAAATTGCTGGAGAACAGCttgtgcattgctggagctcagccAGCAGGTAGGGCTCTGTTGGTGCTGTCTTCGTCTTTTGCAGATTGGAGTGCAGCAGAAGAAGGAAACCCACAAGGGAATAGTAAAGATTTATCTAAAGAACACTGGAGAACATTTGATTCATAGCCAGCAAGTAGAGCTCTGTATGTCTTGTTATTGTCTTTTGCAGTTTAGACTGGGGCATGTGGAGAAATGGAAATCACACCTCAGGAATGGGCGACGCAGTAGTACAGTAGGtagctgcgtaaaacttatgctggataagttgacagttcattcaactgtggcgacctctgattaataaagggactaagccaaaaagaaaatgaatgaatgaatgaatgaacctcaGAAATGACTGCAAACTAATAGTCTTGTTTGGTATTTCCTAACTGGATAGGtgga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027076 lncRNA upstream 1263 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027075 lncRNA upstream 4470 15446623 ~ 15449445 (+) True XLOC_012682
TCONS_00027074 lncRNA upstream 13055 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00027073 lncRNA upstream 13862 15436744 ~ 15440053 (+) True XLOC_012681
TCONS_00026885 lncRNA upstream 16718 15436734 ~ 15437197 (+) False XLOC_012681
TCONS_00025359 lncRNA downstream 676961 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00025361 lncRNA downstream 735371 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00027078 lncRNA downstream 853374 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00027079 lncRNA downstream 1342008 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA downstream 1342308 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00025338 mRNA upstream 163918 15271993 ~ 15289997 (+) True XLOC_012679
TCONS_00025336 mRNA upstream 265861 15175478 ~ 15188054 (+) False XLOC_012678
TCONS_00025337 mRNA upstream 265861 15182965 ~ 15188054 (+) True XLOC_012678
TCONS_00025335 mRNA upstream 312796 15132112 ~ 15141119 (+) True XLOC_012677
TCONS_00025334 mRNA upstream 324219 15106518 ~ 15129696 (+) True XLOC_012676
TCONS_00025339 mRNA downstream 159420 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025340 mRNA downstream 187812 15644559 ~ 15666942 (+) True XLOC_012686
TCONS_00025341 mRNA downstream 226410 15683157 ~ 15693240 (+) True XLOC_012687
TCONS_00025342 mRNA downstream 249413 15706160 ~ 15718931 (+) True XLOC_012688
TCONS_00025344 mRNA downstream 301628 15758375 ~ 15768336 (+) True XLOC_012690
TCONS_00025333 other upstream 457210 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 804620 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1504991 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3622895 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3996585 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025343 other downstream 255682 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 676937 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 1259204 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 1265052 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1521881 16978628 ~ 16983066 (+) False XLOC_012711

Expression Profile

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