XLOC_012687 (si:ch211-264e16.2)


Basic Information

Item Value
gene id XLOC_012687
gene name si:ch211-264e16.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15683157 ~ 15693240 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025341
CAATTACGGGATGTGCACAAAAAAGAACATAAGCAAGATGAGCAGAAGGAACAAGAAcaGAAATTTTGGGATGTGTGCAGAGAAGTGCCAATCATTCAAAATGAGCAGATGCCAAAGAAACGAATGCACTGTCTAAAATGGTTCGCATGTACAGTTGTTGGCTTGCTTGTCTTCATTCTTGCACTTCTCAGTAAAACATCATTTCTGCTTTTGATAACGTTTGGAAACAATCAAACAGACATTATTCATTCAGACAAAAAGCCCACTGCTCTACTTGCCATTGGGTTTGTTCTGGTCGGGCCAAATGTTCTGCTCCTGCTAAAAAGCACATGGAAGTTCATTTTCAAGAGTGCAACCATGCCAGCTAAAAAAACAGTTTTCTGGGTCCTTTGTGTTGAAATCCTGGTAGCATTGGGAGCTGCAGTTCTTACAATTGTAGCCATGCCACACTTTGACATTGTCACTAATGTGATGATCCTAAACAGTGTGAGCATTTTATCCGCAGTTTTCCAGGTGGTTGCAGAGTGCCTTGCCAAAGAGAGGAAGCGTCTTATAATGCTCCCGGTTTTATCTATTATCTTTATAGTCCTGGGTTATGTGTTGTTTGTGGTCAACTATCTGGTATTCGAAAGTTCTTTTTGTATAACAATTGGACTTGCCATCTTTGGGACCATCTGCGTTTCTATGAACTGGTGGGAAAACTACAGTACACTTTTTAACAGTTTACACCTAAAGGGGATATCCAAAGACATTGGCAAATCTCGTAATGCAGTGAACATCATCTCCAGCTTGACAAGAATCCTGATTACTTCAGCTGTGATTGGAGCGTATGTCACTCTAACAGGTGATGGCTGGAATTCAGTCAAACTTGTCTTTGAAACGGTTGTCATTGCATTGGTTGTCATCCAGACTCTATCCTCAGCCTTGTGTCGCTGGTTTGTGGTCGTGGCTTGCAAGATGCACGCTTTGCGACGTAGTTTTTTTATGCCCATGTACTTTGCCTCAGTTATAGTTTTGGCAGTGTTTTTGTCTCCACTTGTAGTCAAGTTCCCTGTGTCTAATTACACTTCAATCCCTCTAGACAAAAGTGAATCCAGTGTAGAGTGGGTGAAGTTGTTGCTGGCCGATGCCATAAAAACTTTACTCACCAGAGACATTGTGGTAAACATGAAAACAGAAGGACTGGTCTGTTTAGGCTGTTCTGCTCTCTTCTGGTGGCTGGGACTTGTGCTTAGCACAGTTTATATCTGGTTCCTAAAGATCCATCGAATTGAAAGAACCCAAGATCTGTTTGTGCAACGCATGTATGAAGGAGCGTTTTTGGAGCAGTCCTTGTTGCTGAACACTCGTTTTGAAATCAGAAAGAAAATCAAGGACAAAAAGTGTGCACAAATTATCCGAGTGTTTCTATGTGCTACAATGTGGCATGAAACCTATGATGAAATGATGAAGATAATCATCTCTATGTTCAGACTTGATGCATATAGGCCCAAAACCGGAAAACACAGCGATATTGAGTTtgaatttcatgtttattttgatGACGCTTTCAAGGATGACAGTAATCAAAGGGAGCGCCTTGCAAATGAATACGTTGAAATTCTTGTGGAAGTTATTAAAGAAGTTtacatCATTTTTAGTGAGGAGGATCCATGTGTCTTCAAGAAGATGCAACCATTACCAACCCAGAAGATCATAAGCACTCCTTATGGAGGTCGGCTGGAATACACACTTCCAAAAGGCAATGTCATGATGGTTCACCTCAAAGACAAGCAACTTATCCGTCACAAAAAAAGATGGTCTCAGATAATGTACTTGTATTACATTCTTGGCTGGAGACTTAACAAACAGTACTATGAGAAATTTGAGGCAGGTGAAGAACCGGATTTGCTTAAAGAAAAACTAAAGagagaaagagagaacacATATATCCTGGCTCTGGATGGGGATACAGATTTCCAGCCTTCTGCAGTCATGCTGTTAATTGACAGACTTAAACTCTACCCAGAGGTCGGAGCCGCCTGTGGCAGGATTCATCCCACAGGCACAGGACCGATGGTGTGGTATCAGAAGTTTGAATACGCTGTAGGCCACTGGCTGCAAAAGACTGCCGAGCATGTATTCGGTTGTGTGCTCTGCAGTCCTGGATGTTTTAGTCTTTTCAGAGGAGCTGCACTTGTGGAAGACAACGTCATGAAGAGATACACAACCAAAGCCAGTGAAGCCAGCCATTATGTCCAATATGATCAAGGTGAGGACCGCTGGTTGTGCACTCTGTTGCTGCAGCAGGGTTGGAGAGTGGAGTACAATGCAGCATCTGATGCCTACACCAATGCTCCACAGGATTTTAAAGAGTTCTACAACCAACGCAGGCGCTGGGGACCTTCTACCATGGCCAACACTATTGACCTCCTGGGCTCAGGACAACTGACTTCTCAAAGGAACAGCTCTATCTCAAAACTTTATATATTGTACCAGATTATCAGCATGGCAGCTTCCATCTTGGGTCCTGCTACTATCTGCCTCATGATATCAGGAAGCTTTGTGTTCATATTCAATATGAATGAAAATACTGCCCTTGCTTTGGCGATAGTGCCCCCTACGGTCTACCTTATCCTGTGCTTCAAACTGAAATCTGATACACAGATTAGAATTGCAGCAATCATGAGCATTATCTATGCATTTCTCATGGCTGGAACAATTCTCTCTATCATCGGTGATTTAGTCAAGCAAAATACTTTTCTGACCCCTAGTGGTCTGTTTCTCATTGGCATGGTCATGCTGTACGTCATCACAGCAGCTTTGCACCCTCAGGAGTTCTCACTGGTTGTCTATGGTTTGCTATACTTCATCTGCATTCCCAGTGGCTATCTGCTATTAGCCATTTACTCCATTGTCAACATGAACAATGTCTCATGGGGGACTCGTGAGTCCGGCGGCCAGACGAAGACTTCTGCAGTGAACAGTCTCAAGAAGAAGTTTATGAACGCCACATGCTGCAAATGTCCATGCTTGGAATATGAAGATGAAACTAGCAAGGAGATATTACCAGCAGAAACCATAACAAAAACTGAAACGTCACAAATTACCTTGGATATACAAAGTGCAAATGTCTTCCCAACCAGTCCTTACAATCGAAAACCTTGGATTCAACGTTTGCAGCCAAAATTTGGTTTTTGGTTGAAGAGTAAATCCGAATGCAAACTTTCTACaGATGAAGTCAGTTTTTGGATggaaatgcaaaacaaatatcTGGAACCTCTTATGGAAAATAAAGAACAACAAGAAAAAATAGCTAATGATCTGAGAGAACTTCGAAATAAGGTTACATTTGTCTTTTTCTTCTGCAATGCACTTTGGCTAGCGGCAACTTTCTTCCTTCAAACAATTGGTGATGCGGTCTCTATAAAGATCCCAAAAATCTACCCCAATGGGACTCATTCTTCAACAGAAACGTTGTCTCTTGATCCGATTGCGCTGATGTTTCTACTCAGTTTTGCAGTACTGCTGATAATGCAGTTTCTTGGAATGCTTTATCACAGGATTTACACATTAATCCATTATGTGGCTTATGCTGATACAGAAATTAAAGCCCATAGAAAGCAGTCAGAACAGGTTGCACAAATCGTGGACTCAAACCACCATCAAGAGACTACGGAGGATGATGGAACATTATGGTTTCAGAACCCCTCTACCATAGGACACATAACTGCTGTATAGAAGTTTGGATTTAACTCTCATTAAtgctgtataaaataaatatttatttaaatctgaaTGTATTGTATGTTGTGGCCTAAACTATTATGTTGGTCAATTATTTATGTATAAACTgaattctcaaaataaaatattgtataactGTTAAAGCATTGGATATATTCTATAAGAATTGGcatatatttttcctttttttttttggtaagaaTTGGCATATATTTTTCCACTTTATTACTATCATTTCATATATTTCcatgtttcttttaaaaaaattgttaacaatAAATTGAAAGTTTTATGAACATATAATAAATCTTTCATTGTAAATCTGTTCTTTTGAACatactgtatttactgtatagtgtattgaaatacaataaa

Function

symbol description
si:ch211-264e16.2 Predicted to enable chitin synthase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum.

GO:

id name namespace
GO:0030428 cell septum cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0004100 chitin synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-320 Predicted to enable chitin synthase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum.

Ensembl:

ensembl_id ENSDARG00000094415

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025341 True 4101 mRNA 0.40 19 15683157 15693240

Neighbor

gene id symbol gene type direction distance location
XLOC_012686 nr1h4 coding upstream 16215 15644559 ~ 15666942 (+)
XLOC_012685 slc17a8 coding upstream 47750 15616167 ~ 15635407 (+)
XLOC_012684 NA coding upstream 226410 15453915 ~ 15456747 (+)
XLOC_012683 NA coding upstream 230505 15449505 ~ 15452652 (+)
XLOC_012682 NA coding upstream 233712 15446623 ~ 15449445 (+)
XLOC_012688 si:ch211-264e16.1 coding downstream 12920 15706160 ~ 15718931 (+)
XLOC_012689 CR536616.1 coding downstream 19189 15712429 ~ 15712545 (+)
XLOC_012690 si:ch211-219a15.4 coding downstream 65135 15758375 ~ 15768336 (+)
XLOC_012691 ube2na coding downstream 84870 15778110 ~ 15793163 (+)
XLOC_012692 nudt4a coding downstream 102326 15795566 ~ 15837342 (+)
XLOC_012681 NA non-coding upstream 241685 15433464 ~ 15441472 (+)
XLOC_012680 NA non-coding upstream 242297 15432706 ~ 15440860 (+)
XLOC_012700 NA non-coding downstream 616881 16310121 ~ 16315811 (+)
XLOC_012704 NA non-coding downstream 1028559 16721799 ~ 16721982 (+)
XLOC_012707 NA non-coding downstream 1105515 16798755 ~ 16862419 (+)
XLOC_012709 NA non-coding downstream 1248222 16941462 ~ 16941847 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01115368_00004438_00014924 NA coding CI01115368 null 4372 ~ 14924 (+)