XLOC_012688 (si:ch211-264e16.1)


Basic Information

Item Value
gene id XLOC_012688
gene name si:ch211-264e16.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15706160 ~ 15718931 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025342
AAAATTTTGGGATGTAGGCAAAGAAGTGCCTTTTATTCAAGATGAACAGATGCCAAAGAAACTAACACACTGCCTGAAATGGTTCTCTTGTACCCTTGTTGGCATGCTCGTCTTTGTCCTTGCACTCCTCAGTAAAACATCATTTCTACTTTTGATAACATTTGGAAATAATCAAACAGAAATTGTTCCTTTAGACCAAAAACCGACTGCTCTACTTGCCATTGGGTTTGTTCTGGTCGGGCCAAGTGTTCTACTTCTGCTTAAAAGCACATGGAAGTTTATTTTCAAGAATGGTAACATGCCATCTAAAAAAACTGTTTTCTGGGTCCTTTGTGTTGAAATCCTGGTAGCATTGGGAGCTGCAGTTCTTACAATAGTAGCCATGCCACACTTTGACATTGTCACTAATGTGATGATCCTAAACAGCATAAGCATCCTATCTGCATTTTTTCAAGTGGATGCTGAGTTCCTCGGCAGAAAGAGGAAGCATCTTTTGATTCCCccgtttttttccattttctttaTAGTCCTGGGTTATGTGCTGTTTGCAGTGAACTATCTGGTATTTGAAAGTTCTCTCCGCGTATCAGTAGGACTTGCTATGTTTGGGACCATCTGTGTTTCTGTGAACTGGTGGGAAAACTACAGCCCACTTTTCACCATCCTGTCCCTAAAGAAGATTTCCAAAGACATGGTGAAGTCCAGTAATGCGGTGAACATCATCTCCAGTTTGACAAGAATCCTGATTACTTCAGCTGTGATTGGAGCTTATGTCGCTCTAACAGGTGATGGCTGGAAATCTGTCAAAATCATCTTCGAAACGGTTGTCATTGCATTGGTTGTCATCCAGACTCTATCCTCAGCCTTGTGTCGCTGGTTTGTGGTTGTGGCTTGCAAGATGCACGCTTTGCGCCGTAGCTTTGTTATGCCCATGTACTTTGCCTCAATCATCGTTTTGGCAGTGTTTTTGTCTCCACTTATTTACAGCCTCCCATTGTCTAATAACACTTCAATCACTCTAGAAAAAAGTGAATCCAGTACAGAATGGGTGGAGGTTTTGCTGACAGATGCTATACAAACTTTACTAACTAGGGACATTGTGGTAAACATGAAAACAGAAGGACTGGTCTGTTTGGGCTGTTCTGCTCTCTGCTGGTGGCTGGGGCTTGTGCTCAGCACAATTTACATCTGGTTCCTGAAGATCCATCGAATTGAAAGAACCCAAGATCTGTTTGTGCAACGGATGTATGAAGGAGCGTTTTTGGAGCAGTCCTTGATGCTGAACACCCGTTTTGAAATCGGAAAGAAAATCAAGGAGAATGAAGTTGCAgaaccaacaaaaaaaatcaaagtgtttctgtgtGCAACAATGTGGCATGAAACCTACGATGAAATGATGAAGATAATCATCTCCATGTTCAGGCTTGATAAATATAGACCAAAACATGGAAAGCACAGTGATGTTGAGTTtgaatttcatatttattttgacgACGCTTTCAAGGATGTCAATAATGGAAGGGGGCGGCTTACAAATGAATACGCTGAAATTCTTGTGGACgtaattaaagaaatttacatCATTTTTAGTGAGGAGGATCCATGTGTGTTCAAGGAGATGCCATCATTACCAAGCCAGAAGATCATACACACTCCTTATGGTGGTCGACTGGAATACACCCTTCCAAATGGCAATGTCATGATGGTTCATCTCAAAGACAAGCAACTTATCCGTCACAAAAAAAGATGGTCTCAGATAATGTACTTGTATTACATTCTTGGCTGGAGACTCAACAAACATGACAGGGAGAACACATATATCCTGGCTTTGGATGGGGATACTGATTTCCAGCCATCTGCAGTCATGCTGTTAATTGACAGACTTAAAATATACCCAGAAGTTGGAGCAGCCTGTGGCAGGATTCATCCAACAGGAACAGGACCAGTGGTGTGGTATCAAAAGTTTGAATATGCTGTAGGCCACTGGCTACAAAAGACTGCAGAGCATGTATTTGGTTGTGTGCTGTGCAGCCCTGGATGTTTTAGTCTTTTCAGAGGAGCTGCACTCATGGATGACAACGTCATGAAGAGATACACAACCAAAGCCAGTGAAGCCAGCCACTATATCCAGTATGATCAAGGTGAGGACCGCTGGTTGTGCACTCTACTGCTGCAGCAGGGTTGGAGAGTGGAGTACAATGCAGCATCTGATGCCTACACCAATGCTCCACAGGATTTTAAAGAGTTCTACAACCAACGCAGGCGCTGGGGACCTTCTACCATGGCCAACACTATTGACCTCCTGGGCTCAGGACAACTGACTGCTCAGAGGAACAGCTCTATCTCAAAACTTTATATATTGTACCAAGTTATCAGCATGGCAGCTTCCATCTTAGGTCCTGCTACTATTTGCCTCATGATATCAGGAAGCTTTGTTTTCATCTTTAACATGGAGGAAAATAGTGCACTTGCTTTGGCTATAGTGCCCCCTACAGTCTACCTCATCCTGTGCTTCAAACTGAAATCTGATGTGCAGATTACCATTGCAGCAATCATGAGCCTTCTCTATGCATTTCTGATGGCAGGAACAGTTCTCTCCATCATTGGAGATTTAGTGAAGCAAAATACTTTTATGACCCCTAGTGGTCTGTTTCTTATTGGCATGGTCATACTGTACCTCACCACAGCAGCTTTGCACCCTAAGGAGTTCTCAATGGTCATCTATGGACTGCTATACTTCATCTGTGTTCCTAGTGGCTATTTGCTCTTAGCCATTTACTCCATTGTCAACATGAACAATGTCTCATGGGGGACTCGTGAATCTGGCGTCCAGGTGAAGACTTCTGCAttagacaacataaaaaaaaagttcatgaaAGCCACCTGCTGCAGATGTCCATGCTTTGAATCTGAGGATGAAATGAACAAGGAGGTATTACAAgcagaaaatacaaataaaactgaaatgctACAAATGACATTGAAAATACAAAGTGCAAATGACTTCGCAATCAATACTCATAAaaATAAACAAACTTGGATTGAACATTTGCTGCCGAAATTTGGTTTTTGCTTGACACCAGAATCTGAACTTTCTATGGATGAAATCGATTTCTGGATAGATTTGCAGAAAAAATATCTAGAACctctaaaggaaaataaagaacAACAGGAAAAAATAGCTAATGATCTTAGAGAACTTCGAAATAAGgcTACATTGGTATATTTCTTCTGCAATGCACTTTGGCTTGTGGCAACTTTCTTTCTTCAAGCAATTGGTGAAGCCGTCTATATCAAGATCCCAAAAATCTATCCTAATGGGACATATGCTGCAAAAGAACTTTTGTCCCTTGATCCAATTGAACTGATGTTTCTACTTGGCTTTGCAGGACTGCTGCTAATGCAGTTTTTTGCAATGCTTTACCACAGAATCTACACATTAATCCATTTTGTGGCATATGCTGAAACAGAAGAAAAAGCCCCGAGAAAGAAG

Function

symbol description
si:ch211-264e16.1 Predicted to enable chitin synthase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum.

GO:

id name namespace
GO:0030428 cell septum cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0004100 chitin synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-226 Predicted to enable chitin synthase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum.

Ensembl:

ensembl_id ENSDARG00000068947

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025342 True 3493 mRNA 0.41 17 15706160 15718931

Neighbor

gene id symbol gene type direction distance location
XLOC_012687 si:ch211-264e16.2 coding upstream 12920 15683157 ~ 15693240 (+)
XLOC_012686 nr1h4 coding upstream 39218 15644559 ~ 15666942 (+)
XLOC_012685 slc17a8 coding upstream 70753 15616167 ~ 15635407 (+)
XLOC_012684 NA coding upstream 249413 15453915 ~ 15456747 (+)
XLOC_012683 NA coding upstream 253508 15449505 ~ 15452652 (+)
XLOC_012690 si:ch211-219a15.4 coding downstream 39444 15758375 ~ 15768336 (+)
XLOC_012691 ube2na coding downstream 59179 15778110 ~ 15793163 (+)
XLOC_012692 nudt4a coding downstream 76635 15795566 ~ 15837342 (+)
XLOC_012693 eea1 coding downstream 122518 15841449 ~ 15881931 (+)
XLOC_012694 itpr2 coding downstream 218679 15937610 ~ 16042504 (+)
XLOC_012682 NA non-coding upstream 256715 15446623 ~ 15449445 (+)
XLOC_012681 NA non-coding upstream 264688 15433464 ~ 15441472 (+)
XLOC_012680 NA non-coding upstream 265300 15432706 ~ 15440860 (+)
XLOC_012700 NA non-coding downstream 591190 16310121 ~ 16315811 (+)
XLOC_012704 NA non-coding downstream 1002868 16721799 ~ 16721982 (+)
XLOC_012707 NA non-coding downstream 1079824 16798755 ~ 16862419 (+)
XLOC_012709 NA non-coding downstream 1222531 16941462 ~ 16941847 (+)
XLOC_012711 CR925798.1 non-coding downstream 1259697 16978628 ~ 16983066 (+)

Expression


Co-expression Network