XLOC_012691 (ube2na)


Basic Information

Item Value
gene id XLOC_012691
gene name ube2na
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15778110 ~ 15793163 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025345
ACGCACCGCGCCGGAAGGCGTGTGTCTGTGCACTGCGTCTCCGCCGTCAATGCAAACGAAGTAAGAGGCACCGTGAGTCAAAGCTAAAATCCGCATTCAAGACAAGATGGCAGGGTTGCCCCGCAGGATCATTAAGGAAACACAGCGTTTGTTGGCAGAGCCGGTGCCGGGTATAAAGGCAGAGCCAGATGAGGGCAACGCTCGCTACTTCCATGTGGTCATCGCCGGACCTCAAGACTCTCCCTTTGAGGGAGGAacttttaaacttgaactctttcTTCCTGAAGAATATCCCATGGCAGCTCCGAAAGTACGCTTCATGACCAAAATATATCACCCCAATGTAGACAAGCTGGGAAGAATATGTCTAGATATTTTGAAAGATAAGTGGTCTCCAGCTCTGCAGATCCGCACAGTGCTGCTATCAATCCAGGCATTACTAAGCGCTCCCAACCCAGACGATCCTCTAGCAAACGATGTCGCAGAGCAGTGGAAGACTAATGAAGCTCAAGCCATAGAGACAGCCCGAACATGGACCAGGCTTTATGCCGGGAACAATATTGAAGTCTAGAAATGGGGGGaatgaaaagagagagagagaaaaaaggaaGTCAAGAGTGAACACAACTCCATGTTCTGCCAAGACCTAATCATTTTCATGTAAAGGACACAGTCTTaggaaacaaacaagcaaaatatgATAAACTGTAAGGAATATATtaacacaagtaaaaaaaaagaaaacttcagACAATTTGTAATTTAAATGCACATTAGTACAACAAAAAACAAGCGTCTTTGTCCTGATTCACTGCTGTTCAGATGCATGGGCGGATGATCTACTCATACGGCATTCTTTTACCATGGTTGGGGAGGGAGCCGCAGACTTCTGCTATTAAGCGTGCATTAAAACTGACCGTCATTTTTCTGTCCCATAGTTATTTTCTGGGGGGAGGGCTGGGGtaaccttttttttatatttcttttaaccTTTTTCTTGTCATTGCTCTTTATTATTAAGGAGCTGCAGACTTAGCCCCTGCTTAGAGCACCCTTTCTGTCAGACATCAGACTTACCCTCGTAGAAAACATAGCAGAGAGCTCACTAAAATGGAAAAGAAATCCAACATTTAAACCACATGCAAACAGTAGTTTCACCTGGGAAATGGTTCAACTGGAAAGTCTTTCCACCATCACGGTAACCGTTAAAAGATGTAAACCCTAACCTAGAACTTGATTTATATTTGAACTATGGATGGGCAAAGTAGAGCTAGAGAGAGAAGGGAGATGTTGCGTAATATTTCTTTTAGTATAACAATTCTGTCATCGTATCCggttttagtgttttgtttttatctatctTGCCATGGCTGTTCTAATTGCACTCTTGAAACTCCATCATTgcgtgctttttttctttttcttttcttttttctcgtGTCCAGCACAGTCCACTGCATTTAGATTCATTTGTCTGTTTCTTCCCTTAAGCATTTATTTCCTTGCGCCAAGGTAGCTGGGGCGGGGGGCTGAAGACGAATGATGGATAGTGAGATTTTTAGTAAAGGGATTGAGGGGTGGGAATGTTTGCGGAAACATTGTAAAAGATCAATAAAGGCTTTGTCTCAATTTCCACGATTGGTCTTTGGTTAAAACGTCAAGTCTGTAAATTCCCGCTTTCTAtagaaaggggaaaaaaaaataaaacaaattctgctttttaaaaatgtgatgacAAAAGTCCACACACATATTTCTGTTCTTTctgtaaataaaaatctgttgATTAATAATA

Function

symbol description
ube2na Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage and protein polyubiquitination. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N).

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0042769 DNA damage response, detection of DNA damage biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2873 Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage and protein polyubiquitination. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N).

Ensembl:

ensembl_id ENSDARG00000008748

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025345 True 1795 mRNA 0.42 4 15778110 15793163

Neighbor

gene id symbol gene type direction distance location
XLOC_012690 si:ch211-219a15.4 coding upstream 9774 15758375 ~ 15768336 (+)
XLOC_012688 si:ch211-264e16.1 coding upstream 59179 15706160 ~ 15718931 (+)
XLOC_012689 CR536616.1 coding upstream 65565 15712429 ~ 15712545 (+)
XLOC_012687 si:ch211-264e16.2 coding upstream 84870 15683157 ~ 15693240 (+)
XLOC_012686 nr1h4 coding upstream 111168 15644559 ~ 15666942 (+)
XLOC_012692 nudt4a coding downstream 2403 15795566 ~ 15837342 (+)
XLOC_012693 eea1 coding downstream 48286 15841449 ~ 15881931 (+)
XLOC_012694 itpr2 coding downstream 144447 15937610 ~ 16042504 (+)
XLOC_012695 FO834850.1 coding downstream 260292 16053455 ~ 16100225 (+)
XLOC_012696 bhlhe41 coding downstream 332689 16125852 ~ 16130165 (+)
XLOC_012684 NA non-coding upstream 321363 15453915 ~ 15456747 (+)
XLOC_012683 NA non-coding upstream 325458 15449505 ~ 15452652 (+)
XLOC_012682 NA non-coding upstream 328665 15446623 ~ 15449445 (+)
XLOC_012681 NA non-coding upstream 336638 15433464 ~ 15441472 (+)
XLOC_012700 NA non-coding downstream 516958 16310121 ~ 16315811 (+)
XLOC_012704 NA non-coding downstream 928636 16721799 ~ 16721982 (+)
XLOC_012707 NA non-coding downstream 1005592 16798755 ~ 16862419 (+)
XLOC_012709 NA non-coding downstream 1148299 16941462 ~ 16941847 (+)
XLOC_012711 CR925798.1 non-coding downstream 1185465 16978628 ~ 16983066 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_06629494_06632725 UBE2NA, UBE2NB, MCG1038069, UBE2N coding CI01000013 null 6629494 ~ 6632725 (-)
bowfin (Amia calva) AMCG00012739 ube2na,ube2nb,ube2n,LOC105897570,LOC107658971,LOC107707098,LOC107555890 coding CM030125.1 CM030125.1 6280300 ~ 6282779 (+)