XLOC_012696 (bhlhe41)


Basic Information

Item Value
gene id XLOC_012696
gene name bhlhe41
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16125852 ~ 16130165 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025356
caGAGGTGCTGCGCGAGACCGGACACAACGCACTGCCGCTCCGCTCAGATATTGGATTAACCAAACCTCACTGTATAACAAAGTGGAACAAAGTTATGGAAGAAAGAATATCGAGAATGCAGAACAGACAGTTTCTGGATCACGCGGATTTCTTGGGGGTGGAATATTCATCGCTCTACATGTGCAAATCCAAAAGGGGGATGAAGAGAGAGGAAGGAAAGGACGCGTACAAGTTACCACACAGACTGATCGAGAAAAAGAGGAGGGAccgaataaatgaatgtattggGCAGCTGAAGGATTTATTACCCGAACATCTCAAACTCACGACTCTGGGTCACTTGGAAAAAGCGGTGGTTCTGGAACTGACGCTGAAGCATTTGAACGCTTTGACAGCTGTCACAGAGCAGCAGCACCAGAAGATCATCGCTTTGCAGAACGGGGAGCGATCGCTGAAGTCTTCCCTCCAGGCTGACTTAGACGCTTTCCACTCAGGCTTTCAAGCATGTGCCAAAGAAGTCCTGCAGTATCTGAACAAGGTGGAGAACTGGACGGCGCGCGAGCAGAGGTGCACGCGACTCATCAACCACCTACACAAAGTTTCTGCTCAGTTCCAGCCAGGCACAGGGATCCTGCAGCAGCCAGTGGCAGGAGACGACGCTCCAGAGCGGGACACCCAGAGAGATCCTCAAGCCAACTGCGTCCCTGTCATCCAGAGGACTCAAAACCTCGAGCTTAATGAGAACGACACTGACACAGACAGCGGGTATGGAGGAGAGGCTGAGAAAGGCGATGGAAAGAGCGAGAAAGGATGCGACACAGCAAAAGGAGTTAAAATCAAGCAGGAGTTTGGAGATGAACGTGTCACTAAAAAAGCTAAAATGAACTGGTCGGCGAATGGTGGTTCAGATTCCACAAGTACGCGACCAGATGTGGCGCTTATGAACTCTTTAATGGGAATGACCGGGGTTGGTGGACAACAAACTCCCTTTTGCATGCCGTTTTACTTCATAAACCCGTCTGCAGCAGCATCATACATGCCTTTATTTGACAAAAGTCATTTGGAGAAGTTGGTGTATCCAGCAGCAGCGGCGGCGGCATTGACCACACCATTTCCATGGCTTTACCCTGGGATCCCCACACACGCCTCTGCTGCAGCCGCAGCAGCCATCGCTTTCCCCAACGCATCCACCGATAAAACCTCTGGATTTGATGCAGCGTCGTCAAAAGATGACGAGCCGGAGTCTCCTGATGATGACCTGTCCAATGAGGCCGACCTGGCCTCTCCTGCATCTGAAGATCACGGCTCAGAAATTGATACAAGTCATCAGCCCCAAAGAAATGACAATGATGGTACATAAAGCTGATGTTTCGACCTTTGAATACACACTAGTTTGCTTGTAAAACCGCTATTTATCTGTTTCTCTTAATTTAATTGTCATTAAGTATTTACTATAGTGTTTCTATGGATTTCCAAACGAAAAgctgttcttttgtttgtttttttgcattattattggtattattaaaaACTCAAAACTTCACGTCAAATtggtttaccttttttttttaggggAGAATGGGGGACGTTGTAACAGACAGTGCCTTTTGCACTGATTCCTTgaatgaaaatctgaacttttttctttttgtccttTATGTCTTGCCATACAATGGCATATTGATTGAAAATGTGTGAAATCCTCAGGCTTTGCTCTGAGTTTTTTTGttgtagctgtttttttaaatgatgaagaAACTTAGTTTAGTGCAATAGTTATTAAGCTAAAGAGAAGCGCTTATCCTAGCGGAACGTTCCTTTCAAAGACTTGGAAGTCACATATTGGACTCTTGGATGTAATGTTTGATACTGACCTCAAGCAGGCTGGTGTGACTGCTGCAGTATTTGTCAGATGTAACTTTCTATTACTGGATTTCAGTtgtctttttctctcttttcaaTGTTCAGCGCTTGAAAGAGTTACCTACATACCTCAACATAGTATTGTGTTTGGGCCAGGACTTCTTCGAGATGCTCCTCTGGTAGGGGTGGTGACGAAATGTTTCGAGCGATTTTATTTGGACAAATGATGTGACCAACAATAATCCTCTGATGTAATGTTACAGCagcccccccccctctctctctctctctctgtctctttttctCTCACTTTATCTCTCTCTCCCCATCCCAAAAGATTAGTATGAATCTCTTGTAAAGGAAATCAACACTCCAGATCAAACTGGCACCTGTCAGTCAACACTGAAAGTGCTTTGCCAACAATCTGACATCATTGTCCTGTGTCACCTCTAGCAAAAATATACAAGGTATAATAGCACCTTATGGAACTTTGATATTgaatgtaatctgtgttctttTGGTAGATCTAAAagtttgtactgtatatattctGATAAAAGTAGTTATTTAATCCAGAGGTAAAGTGCACTTTTTCTTGCCTATAACACAATCCTCACTCTTCGTTTTTAAGCCAATGCCCTTTGAACTCAAGCTATGTGTTTTTCTTAAGGAAATCTTCTTAAATACCATACAAGGAAAAGTGTTGGATTATGTATCTATAACATCTTAACACTCTTGAGCTGGCTCACTTGAGTCCGGGACAATTGTTAAAGAGGTGAAACCTTTAAAGAAATCAAACGTGCTTTGCCTTTTCGGAAAGCTTTTCACTACTCATGACCTCAGACATGCATATGGGTCATGTTGTGTATTGTACAAATGTTGTGGAGCACTGTAATATGACATGAATCAACATGTGAATGGACCTTTTCAGATTGGGAGATTCCAGGAGGCTCTCGAGTTTTattgaatgtgtttatttttctAGGCCTGGGTTCATGAATGCATATAGGAACAGTGATGTACCAGCTGCCGTTGATTTCTGCATTGTAACACATTTCATAGGCCCTATAGTGTCTTTGCCTCAACTGTCATTTGCCTCAACAGTGGCATGTGGATGTATATAGTTTGTGAATATGCTGTATGTTTAATGTTTATGTTGTAGAAGAAATCTATGGAGTTTTTTAAAGGATAAACTGAGCGACTGCTGCACATTTCCTTAATGCTTTACACATTTGCTGTTTGAAATTATGCAGCTCAGTTGTCAAATAAACATAAGCTCATGTGAACAAAA

Function

symbol description
bhlhe41 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated; response to cold; and sleep. Predicted to be active in nucleus. Is expressed in several structures, including brain; cardinal system; pleuroperitoneal region; shield; and swim bladder bud. Orthologous to human BHLHE41 (basic helix-loop-helix family member e41).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030431 sleep biological_process
GO:0032922 circadian regulation of gene expression biological_process
GO:0009409 response to cold biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-146 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within negative regulation of transcription, DNA-templated; response to cold; and sleep. Predicted to be active in nucleus. Is expressed in several structures, including brain; cardinal system; pleuroperitoneal region; shield; and swim bladder bud. Orthologous to human BHLHE41 (basic helix-loop-helix family member e41).

Ensembl:

ensembl_id ENSDARG00000041691

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025356 True 3155 mRNA 0.43 5 16125852 16130165

Neighbor

gene id symbol gene type direction distance location
XLOC_012695 FO834850.1 coding upstream 25627 16053455 ~ 16100225 (+)
XLOC_012694 itpr2 coding upstream 83348 15937610 ~ 16042504 (+)
XLOC_012693 eea1 coding upstream 243921 15841449 ~ 15881931 (+)
XLOC_012692 nudt4a coding upstream 288510 15795566 ~ 15837342 (+)
XLOC_012691 ube2na coding upstream 332689 15778110 ~ 15793163 (+)
XLOC_012697 ctsd coding downstream 3430 16133595 ~ 16146081 (+)
XLOC_012698 lrriq1 coding downstream 61918 16192083 ~ 16218370 (+)
XLOC_012699 alx1 coding downstream 116641 16246806 ~ 16254746 (+)
XLOC_012700 NA coding downstream 179956 16310121 ~ 16315811 (+)
XLOC_012701 nts coding downstream 199860 16330025 ~ 16339902 (+)
XLOC_012689 CR536616.1 non-coding upstream 413307 15712429 ~ 15712545 (+)
XLOC_012684 NA non-coding upstream 669105 15453915 ~ 15456747 (+)
XLOC_012683 NA non-coding upstream 673200 15449505 ~ 15452652 (+)
XLOC_012682 NA non-coding upstream 676407 15446623 ~ 15449445 (+)
XLOC_012681 NA non-coding upstream 684380 15433464 ~ 15441472 (+)
XLOC_012704 NA non-coding downstream 591634 16721799 ~ 16721982 (+)
XLOC_012707 NA non-coding downstream 668590 16798755 ~ 16862419 (+)
XLOC_012709 NA non-coding downstream 811297 16941462 ~ 16941847 (+)
XLOC_012711 CR925798.1 non-coding downstream 848463 16978628 ~ 16983066 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_06436749_06438533 BHLHE41 coding CI01000013 null 6435271 ~ 6439011 (-)