XLOC_012682


Basic Information

Item Value
gene id XLOC_012682
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15446623 ~ 15449445 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027075
ATAGAACTGGAGAGAGTGAGAACACAAGGTACAGTGACAACCAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTTGCCatgtctgtgtcaggtttttccttTTCAGATAATGGAGAGGTAGCAGAATAAGGTGACTCACAAGGGGAAAGGTGGAGATATACTTAAAGACCTGGAGCTCAGGTAACAGGTACAACTGATTGAACAGGCTGAATAATGGAGTTAGTTTCCAAAAAAGTGTATTATGTATAATTAAATacttgatatctttctctttggcggattggcatggagcatgtggagaaacagggaaacacacggatgggtgcatggatggatgtccTTCTAAGAGGAAGGGGGTTgcggtgggcatagattgtttgCTAGATGTCTTGTCTGTGAAAGTTGCATTGTAGGTAATGGAACCACAACAGACTGAAGAGGGAGACTCATAAGAGGAATGGTGAATATTTATCTGTTAAACACTAGAGAACAAGAGTTGTGGTTGTTATAAATGGTCAATTAGACCTTGGCTGtgtcaggtttttctttttcaggtaatggagaGAGAGCAGAAGAAGGAGATTCACAAGGGGAACGGTAGAGATATACttgaagacctggagctcagGAAGCAGAATAAAATGAACTACATGGAGAAAaagggaatcacacacctcagcaatgactggattttatttttaaaagtcagatTAACGGGTAAATTGATGGATGTCTTACCAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTGACCatgtctgtgtcaggtttttctttttcagataatGGAGAGGTAGCAGAATAAGGGGACTCACAAGGGGAAAGGTGGAGATATACTTAAAGACCCGGAGCTCAGGAAGCAGGCACAACTGATTGAACAGAATGAACAATGGAGTTACATTTCAAAAAAGTGTATTAAGAATAATTAAATACTTGATTtctttctctttggcagattgGCATGGAGGATGTGGAGAAACAGGGAAACACACAAatgggtgcatggatggatgtccttccaagaggaagggggtggtggtgggcatagattacaGTGAGATATAAttgaagacctggagctcagGAAGCAGattgGCCAAAGGAAACAGGGAAACACACACATTggtgcatggatggatgtccTTCAAAGAgcagggggtggtggtgggcatagattgttagatgtcttctctgtggctgttatttacattgtagGTAATGGAACCACAACAGATagaagagggagactcacaagCGGAATGGTGAATATTTATttgaagaacactggagaacatTTGGTTTATTGTTGGAGAACAGTCAGCaagtagagctctgttagtcttgtttttgtcttttgcagattagaCTGGGGAATGTGGAGAAATGGGAATCACACCTCAGGAATGACTGAAAATTGATGGTCAGGAATTTGAAAAATCATGGATGAACGTCCTTCCAAGATACAAGAGGGGTGTTTGGTATAGATGGTTAAAGAGCCcataatatacattaaatagggtcatattttggttgtaagtgtctccaacaacagtctaatatgcatgcaaggtcaaaaaacactttcatggtcttataatctgcatttatttttacctaattattccagctactcccgtatgaatcgtctagtgattcatttgttcccaaacccctccttagcgcgaagctaatctgcgctgattggaccaaagacagtctgttgcgattggttgacacTGACTGCTTTCAGCCAGAGACAGAGTGAAATCCCCAGCAGcaaatcaacaatataaaagtagtcacagtgcatacacgctctatagtgtaaggcgtggatttagctgccagtgggtgaatgtaaatacagacgatggacttgaaaatacagactaactattttattgagcaaaaagtctaagaactggcgaggagattTCTTAGCTTGTCACACtctctctgctcttttcacagacacacacacacatacacacaacccTCCTCCGGACGGcaatgcgcgcgcacacacacatacacacattaccctcctctACGGAACGTAAATAAAGcggcacgcgtcgcgtttttaacgtgactttgcacgcgatatgaaAATATATCGAGTTAACCTGATACTGTACACGCGGTTATAAGTTACAGATCACAACTAAAtgcatttgcaagctagagtaaatgaggcaacaactttaattgcacgtacttacacttgagaaatggaggaagaaattgatccatgtcctgacatgtccatcagcactctttactgatccttccatTAACAAACAGCTGAAGTattgaagtattctttgtagcatgtagtttccagaagtttccagtagtttccaactgcacaagggttataatgctgaggtttcatctctgggtagagactcaataatatccatctgcagtgtgacttcaatcgaccggcatgtttgtgtgtgtctgggtttctgtgttagaggCCGGGgctgcaggtttcaaatctcccgggtttgcacgtgcgcgtgaataacttggtttcgttagtatgtcatggcgaaacacagaatgactcgttatcaagatgactcgtttgaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027075 True 2632 lncRNA 0.42 3 15446623 15449445

Neighbor

gene id symbol gene type direction distance location
XLOC_012681 NA coding upstream 5151 15433464 ~ 15441472 (+)
XLOC_012680 NA coding upstream 5763 15432706 ~ 15440860 (+)
XLOC_012679 si:dkey-103i16.6 coding upstream 156626 15271993 ~ 15289997 (+)
XLOC_012678 si:ch73-62b13.1 coding upstream 258569 15175478 ~ 15188054 (+)
XLOC_012677 zgc:153031 coding upstream 305504 15132112 ~ 15141119 (+)
XLOC_012683 NA coding downstream 60 15449505 ~ 15452652 (+)
XLOC_012684 NA coding downstream 4470 15453915 ~ 15456747 (+)
XLOC_012685 slc17a8 coding downstream 166722 15616167 ~ 15635407 (+)
XLOC_012686 nr1h4 coding downstream 195114 15644559 ~ 15666942 (+)
XLOC_012687 si:ch211-264e16.2 coding downstream 233712 15683157 ~ 15693240 (+)
XLOC_012675 BX649610.2 non-coding upstream 449918 14989079 ~ 14996705 (+)
XLOC_012665 NA non-coding upstream 1207164 14234369 ~ 14239459 (+)
XLOC_012664 BX649568.1 non-coding upstream 1497699 13948810 ~ 13948924 (+)
XLOC_012689 CR536616.1 non-coding downstream 262984 15712429 ~ 15712545 (+)
XLOC_012700 NA non-coding downstream 860676 16310121 ~ 16315811 (+)
XLOC_012704 NA non-coding downstream 1272354 16721799 ~ 16721982 (+)

Expression


Co-expression Network