RNA id: TCONS_00027075


Basic Information

Item Value
RNA id TCONS_00027075
length 2632
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id XLOC_012682
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15446623 ~ 15449445 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGAACTGGAGAGAGTGAGAACACAAGGTACAGTGACAACCAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTTGCCatgtctgtgtcaggtttttccttTTCAGATAATGGAGAGGTAGCAGAATAAGGTGACTCACAAGGGGAAAGGTGGAGATATACTTAAAGACCTGGAGCTCAGGTAACAGGTACAACTGATTGAACAGGCTGAATAATGGAGTTAGTTTCCAAAAAAGTGTATTATGTATAATTAAATacttgatatctttctctttggcggattggcatggagcatgtggagaaacagggaaacacacggatgggtgcatggatggatgtccTTCTAAGAGGAAGGGGGTTgcggtgggcatagattgtttgCTAGATGTCTTGTCTGTGAAAGTTGCATTGTAGGTAATGGAACCACAACAGACTGAAGAGGGAGACTCATAAGAGGAATGGTGAATATTTATCTGTTAAACACTAGAGAACAAGAGTTGTGGTTGTTATAAATGGTCAATTAGACCTTGGCTGtgtcaggtttttctttttcaggtaatggagaGAGAGCAGAAGAAGGAGATTCACAAGGGGAACGGTAGAGATATACttgaagacctggagctcagGAAGCAGAATAAAATGAACTACATGGAGAAAaagggaatcacacacctcagcaatgactggattttatttttaaaagtcagatTAACGGGTAAATTGATGGATGTCTTACCAACATACAAGTGTGGTGGTGAGTATGGATGGTTAATGTGACCatgtctgtgtcaggtttttctttttcagataatGGAGAGGTAGCAGAATAAGGGGACTCACAAGGGGAAAGGTGGAGATATACTTAAAGACCCGGAGCTCAGGAAGCAGGCACAACTGATTGAACAGAATGAACAATGGAGTTACATTTCAAAAAAGTGTATTAAGAATAATTAAATACTTGATTtctttctctttggcagattgGCATGGAGGATGTGGAGAAACAGGGAAACACACAAatgggtgcatggatggatgtccttccaagaggaagggggtggtggtgggcatagattacaGTGAGATATAAttgaagacctggagctcagGAAGCAGattgGCCAAAGGAAACAGGGAAACACACACATTggtgcatggatggatgtccTTCAAAGAgcagggggtggtggtgggcatagattgttagatgtcttctctgtggctgttatttacattgtagGTAATGGAACCACAACAGATagaagagggagactcacaagCGGAATGGTGAATATTTATttgaagaacactggagaacatTTGGTTTATTGTTGGAGAACAGTCAGCaagtagagctctgttagtcttgtttttgtcttttgcagattagaCTGGGGAATGTGGAGAAATGGGAATCACACCTCAGGAATGACTGAAAATTGATGGTCAGGAATTTGAAAAATCATGGATGAACGTCCTTCCAAGATACAAGAGGGGTGTTTGGTATAGATGGTTAAAGAGCCcataatatacattaaatagggtcatattttggttgtaagtgtctccaacaacagtctaatatgcatgcaaggtcaaaaaacactttcatggtcttataatctgcatttatttttacctaattattccagctactcccgtatgaatcgtctagtgattcatttgttcccaaacccctccttagcgcgaagctaatctgcgctgattggaccaaagacagtctgttgcgattggttgacacTGACTGCTTTCAGCCAGAGACAGAGTGAAATCCCCAGCAGcaaatcaacaatataaaagtagtcacagtgcatacacgctctatagtgtaaggcgtggatttagctgccagtgggtgaatgtaaatacagacgatggacttgaaaatacagactaactattttattgagcaaaaagtctaagaactggcgaggagattTCTTAGCTTGTCACACtctctctgctcttttcacagacacacacacacatacacacaacccTCCTCCGGACGGcaatgcgcgcgcacacacacatacacacattaccctcctctACGGAACGTAAATAAAGcggcacgcgtcgcgtttttaacgtgactttgcacgcgatatgaaAATATATCGAGTTAACCTGATACTGTACACGCGGTTATAAGTTACAGATCACAACTAAAtgcatttgcaagctagagtaaatgaggcaacaactttaattgcacgtacttacacttgagaaatggaggaagaaattgatccatgtcctgacatgtccatcagcactctttactgatccttccatTAACAAACAGCTGAAGTattgaagtattctttgtagcatgtagtttccagaagtttccagtagtttccaactgcacaagggttataatgctgaggtttcatctctgggtagagactcaataatatccatctgcagtgtgacttcaatcgaccggcatgtttgtgtgtgtctgggtttctgtgttagaggCCGGGgctgcaggtttcaaatctcccgggtttgcacgtgcgcgtgaataacttggtttcgttagtatgtcatggcgaaacacagaatgactcgttatcaagatgactcgtttgaag

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027071 lncRNA upstream 5151 15433554 ~ 15441472 (+) False XLOC_012681
TCONS_00027074 lncRNA upstream 5763 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00026879 lncRNA upstream 6226 15433759 ~ 15440397 (+) False XLOC_012680
TCONS_00027073 lncRNA upstream 6570 15436744 ~ 15440053 (+) True XLOC_012681
TCONS_00026882 lncRNA upstream 7973 15434119 ~ 15438650 (+) False XLOC_012681
TCONS_00027076 lncRNA downstream 60 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027077 lncRNA downstream 4470 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00025359 lncRNA downstream 684263 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00025361 lncRNA downstream 742673 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00027078 lncRNA downstream 860676 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00025338 mRNA upstream 156626 15271993 ~ 15289997 (+) True XLOC_012679
TCONS_00025336 mRNA upstream 258569 15175478 ~ 15188054 (+) False XLOC_012678
TCONS_00025337 mRNA upstream 258569 15182965 ~ 15188054 (+) True XLOC_012678
TCONS_00025335 mRNA upstream 305504 15132112 ~ 15141119 (+) True XLOC_012677
TCONS_00025334 mRNA upstream 316927 15106518 ~ 15129696 (+) True XLOC_012676
TCONS_00025339 mRNA downstream 166722 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025340 mRNA downstream 195114 15644559 ~ 15666942 (+) True XLOC_012686
TCONS_00025341 mRNA downstream 233712 15683157 ~ 15693240 (+) True XLOC_012687
TCONS_00025342 mRNA downstream 256715 15706160 ~ 15718931 (+) True XLOC_012688
TCONS_00025344 mRNA downstream 308930 15758375 ~ 15768336 (+) True XLOC_012690
TCONS_00025333 other upstream 449918 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 797328 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1497699 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3615603 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3989293 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025343 other downstream 262984 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 684239 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 1266506 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 1272354 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1529183 16978628 ~ 16983066 (+) False XLOC_012711

Expression Profile

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