Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00025359 |
| length | 635 |
| lncRNA type | retained_intron |
| GC content | 0.45 |
| exon number | 3 |
| gene id | XLOC_012697 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007129.7 |
| NCBI id | CM002902.2 |
| chromosome length | 51023478 |
| location | 16133595 ~ 16146081 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0003406 | retinal pigment epithelium development | biological_process |
| GO:0009617 | response to bacterium | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0061061 | muscle structure development | biological_process |
| GO:0005764 | lysosome | cellular_component |
| GO:0004190 | aspartic-type endopeptidase activity | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| ko04071 | Sphingolipid signaling pathway |
| ko04142 | Lysosome |
| ko04140 | Autophagy - animal |
| ko04210 | Apoptosis |
| ko04915 | Estrogen signaling pathway |
| ko05152 | Tuberculosis |
| ko05415 | Diabetic cardiomyopathy |
| ko01002 | Peptidases and inhibitors |
| ko04147 | Exosome |
| id | description |
|---|---|
| ZDB-GENE-010131-8 | Predicted to enable aspartic-type endopeptidase activity. Acts upstream of or within muscle structure development; response to bacterium; and retinal pigment epithelium development. Predicted to be active in lysosome. Is expressed in several structures, including eye; liver; muscle; pleuroperitoneal region; and unfertilized egg. Human ortholog(s) of this gene implicated in Alzheimer's disease; breast cancer; and neuronal ceroid lipofuscinosis 10. Orthologous to human CTSD (cathepsin D). |
| ensembl_id | ENSDART00000149598 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00027077 | lncRNA | upstream | 676961 | 15453915 ~ 15456747 (+) | True | XLOC_012684 |
| TCONS_00027076 | lncRNA | upstream | 681056 | 15449505 ~ 15452652 (+) | True | XLOC_012683 |
| TCONS_00027075 | lncRNA | upstream | 684263 | 15446623 ~ 15449445 (+) | True | XLOC_012682 |
| TCONS_00027074 | lncRNA | upstream | 692848 | 15440123 ~ 15440860 (+) | True | XLOC_012680 |
| TCONS_00027073 | lncRNA | upstream | 693655 | 15436744 ~ 15440053 (+) | True | XLOC_012681 |
| TCONS_00025361 | lncRNA | downstream | 53763 | 16192118 ~ 16193797 (+) | True | XLOC_012698 |
| TCONS_00027078 | lncRNA | downstream | 171766 | 16310121 ~ 16315811 (+) | True | XLOC_012700 |
| TCONS_00027079 | lncRNA | downstream | 660400 | 16798755 ~ 16862419 (+) | False | XLOC_012707 |
| TCONS_00027080 | lncRNA | downstream | 660700 | 16799055 ~ 16836065 (+) | True | XLOC_012707 |
| TCONS_00026886 | lncRNA | downstream | 803107 | 16941462 ~ 16941847 (+) | True | XLOC_012709 |
| TCONS_00025356 | mRNA | upstream | 3543 | 16125852 ~ 16130165 (+) | True | XLOC_012696 |
| TCONS_00025355 | mRNA | upstream | 33483 | 16053455 ~ 16100225 (+) | False | XLOC_012695 |
| TCONS_00025354 | mRNA | upstream | 33483 | 16053455 ~ 16100225 (+) | True | XLOC_012695 |
| TCONS_00025353 | mRNA | upstream | 91204 | 15937610 ~ 16042504 (+) | True | XLOC_012694 |
| TCONS_00025352 | mRNA | upstream | 91294 | 15937610 ~ 16042414 (+) | False | XLOC_012694 |
| TCONS_00025360 | mRNA | downstream | 53728 | 16192083 ~ 16218370 (+) | False | XLOC_012698 |
| TCONS_00025362 | mRNA | downstream | 108451 | 16246806 ~ 16254746 (+) | True | XLOC_012699 |
| TCONS_00025363 | mRNA | downstream | 191670 | 16330025 ~ 16339517 (+) | False | XLOC_012701 |
| TCONS_00025364 | mRNA | downstream | 192365 | 16330720 ~ 16339902 (+) | True | XLOC_012701 |
| TCONS_00025365 | mRNA | downstream | 287911 | 16426266 ~ 16442814 (+) | True | XLOC_012702 |
| TCONS_00025343 | other | upstream | 421163 | 15712429 ~ 15712545 (+) | True | XLOC_012689 |
| TCONS_00025333 | other | upstream | 1137003 | 14989079 ~ 14996705 (+) | True | XLOC_012675 |
| TCONS_00025324 | other | upstream | 1484413 | 14642871 ~ 14649295 (+) | False | XLOC_012672 |
| TCONS_00025309 | other | upstream | 2184784 | 13948810 ~ 13948924 (+) | True | XLOC_012664 |
| TCONS_00025284 | other | upstream | 4302688 | 11830905 ~ 11831020 (+) | True | XLOC_012642 |
| TCONS_00025367 | other | downstream | 577596 | 16715951 ~ 16719190 (+) | False | XLOC_012703 |
| TCONS_00025369 | other | downstream | 583444 | 16721799 ~ 16721982 (+) | True | XLOC_012704 |
| TCONS_00025380 | other | downstream | 840273 | 16978628 ~ 16983066 (+) | False | XLOC_012711 |
| TCONS_00025381 | other | downstream | 840361 | 16978716 ~ 16983066 (+) | False | XLOC_012711 |
| TCONS_00025382 | other | downstream | 841210 | 16979565 ~ 16983066 (+) | True | XLOC_012711 |
