RNA id: TCONS_00025355


Basic Information

Item Value
RNA id TCONS_00025355
length 1437
RNA type mRNA
GC content 0.50
exon number 10
gene id XLOC_012695
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16053455 ~ 16100225 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTCGTTGGTataATGCACCTCTTTTTTGGGTGTCAAAACATATTTCTTTGTGGGGAAGTATTTCCTTTAACATGGCTGTGTTGATCAACTTGGCTGTGGCTCTTTTCTACCCATTTGGAGATGATGGAGATGAAGGTGTTTTGCCTCCATTCCTGTCCGTCTTGCTGTGGGGGGCAGTGGTCGTGAGCACCTTCACGTTGTTCATTCTTCCCCCGCGTGGAGGCATCCTGGCGTTCCTGGTGACCGTCATCTTCCGCTCGATCTACACGCTGGGTTTAGGACCCACACTGCTGCTCCTAGGGGCTGCCAATCTGCTGAATAAAATCGTGTTCCTGGTTAGTTTTGTGGGGAATCAAGGCACGTTCACCCGAGGATACAAGGCAGTAATCATGGACGTCTTCTTCCTCCTGCACGTCAGTTACGTCATCGTCTGCATGCTGGGGCTATTTGTGCACGAGTTCTTCTACAGTATCCTGTTGTTCGATCTTGTGCGTAGAGAGGAAACTCTCCTAAATGTGATGAGGAGTGTAACTAAGAATGGCCGCTCCATCTTCCTCACCGCCGTTTTGGCCATCATTCTGGTCTACCTCTTCTCGATTGTGGGCTTTCTCTTCTTCAAAGATGACTTCCTCATGGAAGTAGACCACCTACCTTTAAGTAAGCATAAAGTGGACGAGATGTTCCCGTCACGCTCTCTTCTATGGTGGCCTTCGAGCTGCACAATGCATAAAACTGGTGAAGAGGATGAAGACGGCAGCGAGCGAGTGTGTGACACCCTGCTGATGTGCATCATTACAGTCCTGAACCACGGCCTGAGAAACGGAGGAGGAATCGCTGATGTTCTGCGCAAGCTTTCCAAAGAGGAGCCCATGTTCCCGGCGCGGGTGGTGTATGACCTGCTGTTCTTCTTCATTGTCATCATCATCGTGTTGAACCTCATCTTTGGTGTGATCATTGATACTTTCGCTGACCTAAGGAGTGAGAAACAGAGGAAGGAGGAAATTCTCAAGACCACCTGCTTTATTTGTGGACTTGAGAGAGACAAGTTTGATAACAAGACCGTGTCCTTTGAGGAGCACATCAAGTCGGAGCACAACATGTGGCATTATTTGTACTTCCTGGTTTTGGTGAAGGTGAAGGACCCCACTGAATACACAGGGCCCGAGAGCTACGTGGCACAGATGATCAAGGAGAAGAATCTGGACTGGTTTCCTCGAATGCGAGCCATGTCTCTGGTCAGCTCTGAGGGAGAGAGTGAGCAGAATGAAATCCGCTCGCTGCAGGAGCGTCTGGACACCACCGTGTCTCTCGTGGCTCAGCTGTCCAGTCAGTTGTCGGAGCTAAAAGAACAGATGACGGAGCAGAGAAAGAATAAACAGAGACTGGGTTTCCTCGGACCACCCCAAATGAACCATCAAATCGCCCCTGCACTCTGA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000189163

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027077 lncRNA upstream 596708 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00027076 lncRNA upstream 600803 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027075 lncRNA upstream 604010 15446623 ~ 15449445 (+) True XLOC_012682
TCONS_00027074 lncRNA upstream 612595 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00027073 lncRNA upstream 613402 15436744 ~ 15440053 (+) True XLOC_012681
TCONS_00025359 lncRNA downstream 33483 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00025361 lncRNA downstream 91893 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00027078 lncRNA downstream 209896 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00027079 lncRNA downstream 698530 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA downstream 698830 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00025353 mRNA upstream 10951 15937610 ~ 16042504 (+) True XLOC_012694
TCONS_00025352 mRNA upstream 11041 15937610 ~ 16042414 (+) False XLOC_012694
TCONS_00025350 mRNA upstream 171524 15841590 ~ 15881931 (+) False XLOC_012693
TCONS_00025351 mRNA upstream 171524 15876385 ~ 15881931 (+) True XLOC_012693
TCONS_00025349 mRNA upstream 182070 15841449 ~ 15871385 (+) False XLOC_012693
TCONS_00025356 mRNA downstream 25627 16125852 ~ 16130165 (+) True XLOC_012696
TCONS_00025357 mRNA downstream 33370 16133595 ~ 16146081 (+) False XLOC_012697
TCONS_00025360 mRNA downstream 91858 16192083 ~ 16218370 (+) False XLOC_012698
TCONS_00025362 mRNA downstream 146581 16246806 ~ 16254746 (+) True XLOC_012699
TCONS_00025363 mRNA downstream 229800 16330025 ~ 16339517 (+) False XLOC_012701
TCONS_00025343 other upstream 340910 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025333 other upstream 1056750 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 1404160 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 2104531 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 4222435 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025358 other downstream 33459 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 615726 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 621574 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 878403 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other downstream 878491 16978716 ~ 16983066 (+) False XLOC_012711

Expression Profile

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