RNA id: TCONS_00025344


Basic Information

Item Value
RNA id TCONS_00025344
length 4017
RNA type mRNA
GC content 0.40
exon number 20
gene id XLOC_012690
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15758375 ~ 15768336 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCTGATCTCAAGTTATGGGATgtagaaaaagaagaaaataagcaAAATGAGAAGGAACAACAACAgaAATTTTGGGATACATGCAGAGAAGTACCAATCATCCAAGATGATCAAATTCCGAGAAACCGAACGCACTGTCTAAAATGGTTCGCATGTACTGTTGTTGGCATGATTGTCTTCATCCTTGCACTTCTCAGCAAAaCATCATTTCTGCTTTTGATAACATTTGGCAACAATCAAACGGTCATTATTCACTCAGACCAAAAACCGACTGCTCTACTTGCCATTGGGTTTGTTCTGGTCGGGCCAAGTTTTCTACTTCTGCTAAAAGGCACATGGAAGTTCATTTTCAAGAACTCAACCATGCCatctaaaaaaacatgtttatggGTCCTTTGTGTTGAAATCCTGGTAGCATTGGGAGCTGCAGTTCTTACAATTGTAGCCATGCCACACTTTGACATTGTCACTAATGTGATGATCCTAAACAGTGTGAGCATCCTATCTGCAATTTTCCAGGTGATTGCTGACTGTCGGGCCAAAGAAAGAAAGCGTTTTATACTGCTTCCGCTTTTATCTATTGTCTTCATAGTCCTGGGTTATGTGCTGTTTGTAGTCAATTATCTGGCATTTGAAAGTTCTCTTCTTATACCAATTTTACTTGCCATCTTTGGAACCATCTGTGTTTCTGTGAACTGGTGGGAAAACTACAGCGCGCTTTTCACCATCCTGTCCCTAAATGAGATTCCCAAAGACATAGCGAAGTCCAGTAATGCAGTGAACATCATCTCCAGTTTGACAAGAATCCTGATTACTTCAGCTGTGATTGGAGTTTATGTTGCTCTAATAGGTGATGGCTGGAAATCAGTCAAAATCGTCTTTGAAACGGTTGTCATTGCATTGGTTGTTATCCAGACTCTATCCTCAGCCTTGTGTCGCTGGTTTGTGGTTGTGGCTTGCAAAATGCACGCTTTGCGACGTAGCTTTGTTATGCCCATGTACTTGGCTTCAATCGTAGTTTTGGCAGTGTTTTTGTCTCCACTTGTAATCACATTCCCAGTGTCTAATAACACTATAAGCTACCTAGTGGGCAATCCAGTGCCCCTATCCAGTACAGAATGGGTAGAGTTGTTGCTGATCGATACCATAGAAACGTTACTCACCAGGGACATTGTAGTAAACATGAAAATAGTGGGACTGGTCTGTTTGGGCTGTTCTGCTCTCTGCTGGTGGCTGGGACTTGTGCTCAGCACAGTTTACATCTGGTTCCTGAAGATCCATCGAATTGAAAGGACCAAAGATCTGTTTGTGCAACGCATGTATGAAGGAGCGTTTCTGGAGCAGTCCTTGATGCTGAACACCCGTTTTGAAATCAGAAAGAAAATCAAGGAAAAAAAGCATGAAAAAGAAACCATCCGAGTGTTTCTCTGTGCGACAATGTGGCATGAAACCTATGATGAAATGATGAAGATAATCATCTCTATGTTCAGgaTGGATAAATATAGGCCCAAAACCGAACAAAAAAGCGATGTTGAGTTTGAATTTCACATTTATGTTGACGACGCTTTCAAGGATGTCAAAGAGGAGCGGCATACAAATGAATATGTTGAAATTCTTGTGGACGTGATAAAAGAAGTTTACCTTGTGTTCAAGAATCAACAACCGTTACCAAGCCAGAAGATCATAAGCACTCCTTTTGGAGGTCGGCTGGAATACACTCTTCCTAAAGGCAATGTGATGATTGTTAACCTCAAAGACAAGAAGCTTATCCGTCACAAAAAAAGATGGTCTCAGATAATGTATTTGTATTACATTCTTGGCTGGAGACTTCACAAAAAGTACTACGAAAAGTTTGAGAGAGAAAGGGAGAACACGTATATCCTGGCTCTGGATGGGGATACTGATTTCCAGCCGTCTGCAGTCATGCTGTTAATTGACAGACTTAAACTCTACCCAGATGTTGGAGCCGCCTGTGGCAGGATTCATCCAACAGGCACAGGACCGATGGTGTGGTATCAGAAGTTTGAGTATGCTGTAGGCCACTGGCTTCAAAAGACTGCGGAGCATGTTCTCGGCTGTGTTCTGTGCAGTCCTGGATGTTTTAGTCTTTTCAGAGGAGCTGCACTCATGGATGACAACGTCATGAAGAGATACACAACCAGGGCCAGTGAAGCCAGCCATTATGTCCAGTATGATCAAGGTGAGGACCGCTGGTTGTGCACTCTACTGCTGCAGCAGGGCTGGAGAGTGGAGTACAATGCAGCATCTGATGCCTACACCAATGCTCCACAAGATTTTAAAGAGTTCTACAACCAACGCAGGCGCTGGGGACCTTCTACCATGGCCAACACTATTGACCTCCTGGGCTCAGGACAACTAACTGCTGAGAGGAACAGCTCTATTTCAAAACTTTATATATTGTACCAGGTTTTGAGCATGGGAGCTTCAATCTTGGGGCCTGCTACTGTCTGTCTCATGATATCAGGAGGCTTTGTGTTTGTCTTCAAAATGAGTGAAAACGATGCCCTTATCTTGGCGATAGTGCCCCCTGCTATCTACCTCATCCTGTGCTTCAAACTGAAATCTGATACGCAGCTTACAATTGCAGCAATCATGAGCATTATGTATGCATTTCTCATGACAGGATCGATTCTCTCTATTATTGGTGATTTAGTGCTGCAAGATACTTTTCTGACCCCTAGTGGTCTGTTTCTCATCGGCATGGTCGTATTGTACCTCATCACGGCAGGTTTGCACCCTAAGGAGTTTTCACTGATCATCTATGGATTGCTTTACTTCATCTGCATTCCCAGTGGCTATCTGCTATTAGCCATTTACTCTATTGTCAACATGAACAATGTCTCGTGGGGGACTCGTGAGTCCGGCGGCCAGGCGAAGACTTCTGCAGTAAACAGTCTCAAGAAGAAGTTTTTGAACGCCACATGCTGCAAATGCCCATGCTTGGAATATGAAGATGAAACGAGGAGGGAGGTAACTCAAGTTGAAGACAAACCTGAAGGGGAAAATATCTCGGAAATACTAAGTGAAAACACCCAAATCATTCCTCAAAATCGAAAACCTTGGATTCACAGTTTGCAGCCAAAATTTGGTTTTTCCTTGAGGAGTGAATCCGCATGTGAACTTTCTGAGGAAGAATTAATTTTTTGGAAGGAAATGCAGAAAAAATATCTACATCCTCTTGAGGAGAAACCAGAACAACTAGCAATAATCGCTAATGATCTAAGAGAACTTCGTAATAAGGTTACATTTGTCTATTTCTTCTGCAATGCACTTTGGCTAGTGGCAACGTTCTTCCTTCAAGCTATTGGCGGTGCAGTCACTATAAAGATCCCAAAAATCTACCCCAATGGGACTCGATCTCCAACAGAAACGTTGTCCCTTGATCCAATTGCACTGATGTTTCTTCTTGGCTTTGCAGCACTGCTGATAATACAGTTTATTGCAATGCTTTACCACAGAATTTACACTTTTATCCATTTTGTGGCGTATGCTGATACTGAAATTAAAGCCCATAGAAAGCAGTCACAACAGgttGTAAAGTTCATGGACCATCATGAGACTTTTGAAGGTGACACACCAATTTCAACAAAACGCAAATCTTTTATATCGGATGGATTTTTTACCTGATACTAATGTTGCGCAATTATAATTGtgtgaatatttatttaatttataaacctAAATGTTTTGCATGTTGTAATGTAACATATGTTGGTCAAGAcattgtatatgtatttattaattacataataTACCTGTTTATTGTCAagtttaatgttattataattagtatttaattagtaataattaatttaatatagttATTATTGAATGTCATGTAAGTGGTGTATGAAGTTACAAAATAGTcaatacattttttgcattttttccacattattatttaatatatttccatgtttctttatttaaagttaattaacaattaattgacagttatatgaaaatatatacaaTGCTTCATTTTAGATCCGTTC

Function

GO:

id name namespace
GO:0030428 cell septum cellular_component
GO:0071944 cell periphery cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function
GO:0004100 chitin synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060503-308 Predicted to enable chitin synthase activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cell periphery and cell septum. Is expressed in fin and scale.

Ensembl:

ensembl_id ENSDART00000137554

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027077 lncRNA upstream 301628 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00027076 lncRNA upstream 305723 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027075 lncRNA upstream 308930 15446623 ~ 15449445 (+) True XLOC_012682
TCONS_00027074 lncRNA upstream 317515 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00027073 lncRNA upstream 318322 15436744 ~ 15440053 (+) True XLOC_012681
TCONS_00025359 lncRNA downstream 365372 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00025361 lncRNA downstream 423782 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00027078 lncRNA downstream 541785 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00027079 lncRNA downstream 1030419 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA downstream 1030719 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00025342 mRNA upstream 39444 15706160 ~ 15718931 (+) True XLOC_012688
TCONS_00025341 mRNA upstream 65135 15683157 ~ 15693240 (+) True XLOC_012687
TCONS_00025340 mRNA upstream 91433 15644559 ~ 15666942 (+) True XLOC_012686
TCONS_00025339 mRNA upstream 122968 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025338 mRNA upstream 468378 15271993 ~ 15289997 (+) True XLOC_012679
TCONS_00025345 mRNA downstream 9774 15778110 ~ 15793163 (+) True XLOC_012691
TCONS_00025346 mRNA downstream 27230 15795566 ~ 15837342 (+) False XLOC_012692
TCONS_00025347 mRNA downstream 27412 15795748 ~ 15837303 (+) False XLOC_012692
TCONS_00025348 mRNA downstream 27529 15795865 ~ 15837342 (+) True XLOC_012692
TCONS_00025349 mRNA downstream 73113 15841449 ~ 15871385 (+) False XLOC_012693
TCONS_00025343 other upstream 45830 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025333 other upstream 761670 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 1109080 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1809451 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3927355 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025358 other downstream 365348 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 947615 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 953463 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1210292 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other downstream 1210380 16978716 ~ 16983066 (+) False XLOC_012711

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00001763 True 9107 mRNA 0.45 36 CM030143.1 15336021 ~ 15359019 (-)