RNA id: TCONS_00025345


Basic Information

Item Value
RNA id TCONS_00025345
length 1795
RNA type mRNA
GC content 0.42
exon number 4
gene id XLOC_012691
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15778110 ~ 15793163 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACGCACCGCGCCGGAAGGCGTGTGTCTGTGCACTGCGTCTCCGCCGTCAATGCAAACGAAGTAAGAGGCACCGTGAGTCAAAGCTAAAATCCGCATTCAAGACAAGATGGCAGGGTTGCCCCGCAGGATCATTAAGGAAACACAGCGTTTGTTGGCAGAGCCGGTGCCGGGTATAAAGGCAGAGCCAGATGAGGGCAACGCTCGCTACTTCCATGTGGTCATCGCCGGACCTCAAGACTCTCCCTTTGAGGGAGGAacttttaaacttgaactctttcTTCCTGAAGAATATCCCATGGCAGCTCCGAAAGTACGCTTCATGACCAAAATATATCACCCCAATGTAGACAAGCTGGGAAGAATATGTCTAGATATTTTGAAAGATAAGTGGTCTCCAGCTCTGCAGATCCGCACAGTGCTGCTATCAATCCAGGCATTACTAAGCGCTCCCAACCCAGACGATCCTCTAGCAAACGATGTCGCAGAGCAGTGGAAGACTAATGAAGCTCAAGCCATAGAGACAGCCCGAACATGGACCAGGCTTTATGCCGGGAACAATATTGAAGTCTAGAAATGGGGGGaatgaaaagagagagagagaaaaaaggaaGTCAAGAGTGAACACAACTCCATGTTCTGCCAAGACCTAATCATTTTCATGTAAAGGACACAGTCTTaggaaacaaacaagcaaaatatgATAAACTGTAAGGAATATATtaacacaagtaaaaaaaaagaaaacttcagACAATTTGTAATTTAAATGCACATTAGTACAACAAAAAACAAGCGTCTTTGTCCTGATTCACTGCTGTTCAGATGCATGGGCGGATGATCTACTCATACGGCATTCTTTTACCATGGTTGGGGAGGGAGCCGCAGACTTCTGCTATTAAGCGTGCATTAAAACTGACCGTCATTTTTCTGTCCCATAGTTATTTTCTGGGGGGAGGGCTGGGGtaaccttttttttatatttcttttaaccTTTTTCTTGTCATTGCTCTTTATTATTAAGGAGCTGCAGACTTAGCCCCTGCTTAGAGCACCCTTTCTGTCAGACATCAGACTTACCCTCGTAGAAAACATAGCAGAGAGCTCACTAAAATGGAAAAGAAATCCAACATTTAAACCACATGCAAACAGTAGTTTCACCTGGGAAATGGTTCAACTGGAAAGTCTTTCCACCATCACGGTAACCGTTAAAAGATGTAAACCCTAACCTAGAACTTGATTTATATTTGAACTATGGATGGGCAAAGTAGAGCTAGAGAGAGAAGGGAGATGTTGCGTAATATTTCTTTTAGTATAACAATTCTGTCATCGTATCCggttttagtgttttgtttttatctatctTGCCATGGCTGTTCTAATTGCACTCTTGAAACTCCATCATTgcgtgctttttttctttttcttttcttttttctcgtGTCCAGCACAGTCCACTGCATTTAGATTCATTTGTCTGTTTCTTCCCTTAAGCATTTATTTCCTTGCGCCAAGGTAGCTGGGGCGGGGGGCTGAAGACGAATGATGGATAGTGAGATTTTTAGTAAAGGGATTGAGGGGTGGGAATGTTTGCGGAAACATTGTAAAAGATCAATAAAGGCTTTGTCTCAATTTCCACGATTGGTCTTTGGTTAAAACGTCAAGTCTGTAAATTCCCGCTTTCTAtagaaaggggaaaaaaaaataaaacaaattctgctttttaaaaatgtgatgacAAAAGTCCACACACATATTTCTGTTCTTTctgtaaataaaaatctgttgATTAATAATA

Function

GO:

id name namespace
GO:0006301 postreplication repair biological_process
GO:0070534 protein K63-linked ubiquitination biological_process
GO:0042769 DNA damage response, detection of DNA damage biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0005634 nucleus cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0061631 ubiquitin conjugating enzyme activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2873 Predicted to enable ubiquitin conjugating enzyme activity. Acts upstream of or within DNA damage response, detection of DNA damage and protein polyubiquitination. Predicted to be active in nucleus. Orthologous to several human genes including UBE2N (ubiquitin conjugating enzyme E2 N).

Ensembl:

ensembl_id ENSDART00000014188

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027077 lncRNA upstream 321363 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00027076 lncRNA upstream 325458 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027075 lncRNA upstream 328665 15446623 ~ 15449445 (+) True XLOC_012682
TCONS_00027074 lncRNA upstream 337250 15440123 ~ 15440860 (+) True XLOC_012680
TCONS_00027073 lncRNA upstream 338057 15436744 ~ 15440053 (+) True XLOC_012681
TCONS_00025359 lncRNA downstream 340545 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00025361 lncRNA downstream 398955 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00027078 lncRNA downstream 516958 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00027079 lncRNA downstream 1005592 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA downstream 1005892 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00025344 mRNA upstream 9774 15758375 ~ 15768336 (+) True XLOC_012690
TCONS_00025342 mRNA upstream 59179 15706160 ~ 15718931 (+) True XLOC_012688
TCONS_00025341 mRNA upstream 84870 15683157 ~ 15693240 (+) True XLOC_012687
TCONS_00025340 mRNA upstream 111168 15644559 ~ 15666942 (+) True XLOC_012686
TCONS_00025339 mRNA upstream 142703 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025346 mRNA downstream 2403 15795566 ~ 15837342 (+) False XLOC_012692
TCONS_00025347 mRNA downstream 2585 15795748 ~ 15837303 (+) False XLOC_012692
TCONS_00025348 mRNA downstream 2702 15795865 ~ 15837342 (+) True XLOC_012692
TCONS_00025349 mRNA downstream 48286 15841449 ~ 15871385 (+) False XLOC_012693
TCONS_00025350 mRNA downstream 48427 15841590 ~ 15881931 (+) False XLOC_012693
TCONS_00025343 other upstream 65565 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025333 other upstream 781405 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 1128815 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1829186 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3947090 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025358 other downstream 340521 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 922788 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 928636 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1185465 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other downstream 1185553 16978716 ~ 16983066 (+) False XLOC_012711

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000013_06629494_06632725.mRNA True 501 mRNA 0.46 3 CI01000013 6629494 ~ 6632725 (-)
bowfin (Amia calva) AMCG00012739 True 1831 mRNA 0.39 3 CM030125.1 6280300 ~ 6282779 (+)