XLOC_012692 (nudt4a)


Basic Information

Item Value
gene id XLOC_012692
gene name nudt4a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15795566 ~ 15837342 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025346
AATTCCACCCACATCAAGCCTCCGGGAATCAACAATGTCCTCCCTTCCTCTGGCGGCAGCAATGATGATGATTTCTCATTCATATTTCTAACCAGGGAAACGCCTATCTGTTGATGGCATCTTGGGTTTGTAACGCAGATCCTATTGCAGCTGATTTAAGGCGACTGCGCAGAGCCGAAGAGCCGCAGCAGAGCAGAGGAGTGTTCACACATAACCAGCCAGCCACCATGCTCCAGTCCAGATCACCTCAAGCCACGATCTCCGCCGTCAAGACAGGAATATTGCCTTCAACGTGAGTCACTTCTGACAAAACGCAAACTGTATGATCAGCCTGGGAAATCTGGGACGACTTTCAGCTCTTGGCCTGAAAGGCAGCTGCGTTGCGCGTCGGATCCAAAAACTAGGCAACCGAGAACACTTGTATTCTTGTTTTGTTCGGAGAAAAACCCACATGATGAAATTCAAGCCCAATCAGACAAGGACGTATGACGGAGAGGGCTTCAAAAAACGAGCAGCCTGCCTGTGCTTCAAGAACGACCGAGAGGACGAGGTTTTGCTGGTTAGCAGCAGTCGACACCCAGATCAGTGGATCGTTCCTGGAGGAGGGATGGAGCCGGAAGAGGAGCCTGGAGGAGCTGCGGTCCGAGAGGTTTATGAAGAGGCTGGAGTGAGGGGCACCCTTGGCAGGCTACTGGGGGTGTTTGAGAACCAGGACAGCAAGCATCGAACCTATGTGTATGTGCTTACTGTTACAGAGACACTGGAAGACTGGGAGGACTCAGTCAATATTGGTCGCAAACGGAAATGGTTCAAGATTGACGAGGCCATCCGGGTGCTACAGTGCCACAAACCATTCCACGCAGAATATCTTCGCAAACTCACTCCTCGCTGCGGCCCCACAAACGGCAACACCCAGGAGCCGACGATGAACACAGACGACAACGCCAGCCTCCGCCAGACGGCCTCACACGACTGCGGACTGACCCGCTTGCACAGATAGAACTACCAGCAGAGCCAAACACGCAAGGGAAACCATCCTCAGACTGGAAAGAGACACTTATGCATGTATCATTTCAATGTTTActatttgaaactttttttaaagtgtagaaaCCAAAGGCTTGTTGTGAAACGCCTGCAAGTTTCTGGGTCAATAAGAACCAGGAtgattattttcataatttttttttctctctctttatcttcctttcatttctaaatgtgcATTTCAAGCCAAACAAAGCAGAGTTATTGGAAGGTATATGTGAAGTGAAGTGTTAAGTATTAATGGacactttgaatatattttttcataGATGGATttaagtggaagaagaagaaaaaggatGGTGGTGATGTGCCAAGGGTTGATTGATTGCTGTTTAGAAAGGGTCTTTTGAAATGCTGTCTATTTATATCTAATAGATAACTAGGCATTCTTGTTAGGGTGTTCATAAAGAACAAAATAGGAACGTAAAATCAAGTCAAAACATCAAAATCatgaattatattatatgtaaataGTCTAAAAGAGGATTTGGGCTGCTTTTGAGTATATTAGATGCCTTCATCACAGAAATCTACCTGTAATATAGGTTTAACATGCTGTGAAGTTGAAGGTCGTTTCACAGTTTGGTCTTAAATGTGAATTTGCAACATTAAAAGGTGCAATCTGA
>TCONS_00025347
CCGCAGCAGAGCAGAGGAGTGTTCACACATAACCAGCCAGCCACCATGCTCCAGTCCAGATCACCTCAAGCCACGATCTCCGCCGTCAAGACAGGAATATTGCCTTCAACGTGAGTCACTTCTGACAAAACGCAAACTGTATGATCAGCCTGGGAAATCTGGGACGACTTTCAGCTCTTGGCCTGAAAGGCAGCTGCGTTGCGCGTCGGATCCAAAAACTAGGCAACCGAGAACACTTGTATTCTTGTTTTGTTCGGAGAAAAACCCACATGATGAAATTCAAGCCCAATCAGACAAGGACGTATGACGGAGAGGGCTTCAAAAAACGAGCAGCCTGCCTGTGCTTCAAGAACGACCGAGAGGACGAGGTTTTGCTGGTTAGCAGCAGTCGACACCCAGATCAGTGGATCGTTCCTGGAGGAGGGATGGAGCCGGAAGAGGAGCCTGGAGGAGCTGCGGTCCGAGAGGTTTATGAAGAGGCTGGAGTGAGGGGCACCCTTGGCAGGCTACTGGGGGTGTTTGAGAGACACTGGAAGACTGGGAGGACTCAGTCAATATTGGTCGCAAACGGAAATGGTTCAAGATTGACGAGGCCATCCGGGTGCTACAGTGCCACAAACCATTCCACGCAGAATATCTTCGCAAACTCACTCCTCGCTGCGGCCCCACAAACGGCAACACCCAGGAGCCGACGATGAACACAGACGACAACGCCAGCCTCCGCCAGACGGCCTCACACGACTGCGGACTGACCCGCTTGCACAGATAGAACTACCAGCAGAGCCAAACACGCAAGGGAAACCATCCTCAGACTGGAAAGAGACACTTATGCATGTATCATTTCAATGTTTActatttgaaactttttttaaagtgtagaaaCCAAAGGCTTGTTGTGAAACGCCTGCAAGTTTCTGGGTCAATAAGAACCAGGAtgattattttcataatttttttttctctctctttatcttcctttcatttctaaatgtgcATTTCAAGCCAAACAAAGCAGAGTTATTGGAAGGTATATGTGAAGTGAAGTGTTAAGTATTAATGGacactttgaatatattttttcataGATGGATttaagtggaagaagaagaaaaaggatGGTGGTGATGTGCCAAGGGTTGATTGATTGCTGTTTAGAAAGGGTCTTTTGAAATGCTGTCTATTTATATCTAATAGATAACTAGGCATTCTTGTTAGGGTGTTCATAAAGAACAAAATAGGAACGTAAAATCAAGTCAAAACATCAAAATCatgaattatattatatgtaaataGTCTAAAAGAGGATTTGGGCTGCTTTTGAGTATATTAGATGCCTTCATCACAGAAATCTACCTGTAATATAGGTTTAACATGCTGTGAAGTTGAAGGTCGTTTCACAGTTTGGT
>TCONS_00025348
ACTTCTGACAAAACGCAAACTGTATGATCAGCCTGGGAAATCTGGGACGACTTTCAGCTCTTGGCCTGAAAGGCAGCTGCGTTGCGCGTCGGATCCAAAAACTAGGCAACCGAGAACACTTGTATTCTTGTTTTGTTCGGAGAAAAACCCACATGATGAAATTCAAGCCCAATCAGACAAGGACGTATGACGGAGAGGGCTTCAAAAAACGAGCAGCCTGCCTGTGCTTCAAGAACGACCGAGAGGACGAGGTTTTGCTGGTTAGCAGCAGTCGACACCCAGATCAGTGGATCGTTCCTGGAGGAGGGATGGAGCCGGAAGAGGAGCCTGGAGGAGCTGCGGTCCGAGAGGTTTATGAAGAGGCTGGAGTGAGGGGCACCCTTGGCAGGCTACTGGGGGTGTTTGAGCAGAACCAGGACAGCAAGCATCGAACCTATGTGTATGTGCTTACTGTTACAGAGACACTGGAAGACTGGGAGGACTCAGTCAATATTGGTCGCAAACGGAAATGGTTCAAGATTGACGAGGCCATCCGGGTGCTACAGTGCCACAAACCATTCCACGCAGAATATCTTCGCAAACTCACTCCTCGCTGCGGCCCCACAAACGGCAACACCCAGGAGCCGACGATGAACACAGACGACAACGCCAGCCTCCGCCAGACGGCCTCACACGACTGCGGACTGACCCGCTTGCACAGATAGAACTACCAGCAGAGCCAAACACGCAAGGGAAACCATCCTCAGACTGGAAAGAGACACTTATGCATGTATCATTTCAATGTTTActatttgaaactttttttaaagtgtagaaaCCAAAGGCTTGTTGTGAAACGCCTGCAAGTTTCTGGGTCAATAAGAACCAGGAtgattattttcataatttttttttctctctctttatcttcctttcatttctaaatgtgcATTTCAAGCCAAACAAAGCAGAGTTATTGGAAGGTATATGTGAAGTGAAGTGTTAAGTATTAATGGacactttgaatatattttttcataGATGGATttaagtggaagaagaagaaaaaggatGGTGGTGATGTGCCAAGGGTTGATTGATTGCTGTTTAGAAAGGGTCTTTTGAAATGCTGTCTATTTATATCTAATAGATAACTAGGCATTCTTGTTAGGGTGTTCATAAAGAACAAAATAGGAACGTAAAATCAAGTCAAAACATCAAAATCatgaattatattatatgtaaataGTCTAAAAGAGGATTTGGGCTGCTTTTGAGTATATTAGATGCCTTCATCACAGAAATCTACCTGTAATATAGGTTTAACATGCTGTGAAGTTGAAGGTCGTTTCACAGTTTGGTCTTAAATGTGAATTTGCAACATTAAAAGGTGCAATCTGA

Function

symbol description
nudt4a Predicted to enable pyrophosphatase activity. Predicted to be involved in diphosphoinositol polyphosphate metabolic process and nucleotide catabolic process. Predicted to be active in cytoplasm and nucleus. Is expressed in notochord; pronephric duct; tail bud; and ventral mesoderm. Orthologous to several human genes including NUDT4 (nudix hydrolase 4).

GO:

id name namespace
GO:0071543 diphosphoinositol polyphosphate metabolic process biological_process
GO:1901907 diadenosine pentaphosphate catabolic process biological_process
GO:1901909 diadenosine hexaphosphate catabolic process biological_process
GO:1901911 adenosine 5'-(hexahydrogen pentaphosphate) catabolic process biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000298 endopolyphosphatase activity molecular_function
GO:0034431 bis(5'-adenosyl)-hexaphosphatase activity molecular_function
GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity molecular_function
GO:0050072 m7G(5')pppN diphosphatase activity molecular_function
GO:0008486 diphosphoinositol-polyphosphate diphosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031010-33 Predicted to enable pyrophosphatase activity. Predicted to be involved in diphosphoinositol polyphosphate metabolic process and nucleotide catabolic process. Predicted to be active in cytoplasm and nucleus. Is expressed in notochord; pronephric duct; tail bud; and ventral mesoderm. Orthologous to several human genes including NUDT4 (nudix hydrolase 4).

Ensembl:

ensembl_id ENSDARG00000057767

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025346 False 1676 mRNA 0.45 5 15795566 15837342
TCONS_00025347 False 1406 mRNA 0.45 5 15795748 15837303
TCONS_00025348 True 1380 mRNA 0.44 5 15795865 15837342

Neighbor

gene id symbol gene type direction distance location
XLOC_012691 ube2na coding upstream 2403 15778110 ~ 15793163 (+)
XLOC_012690 si:ch211-219a15.4 coding upstream 27230 15758375 ~ 15768336 (+)
XLOC_012688 si:ch211-264e16.1 coding upstream 76635 15706160 ~ 15718931 (+)
XLOC_012689 CR536616.1 coding upstream 83021 15712429 ~ 15712545 (+)
XLOC_012687 si:ch211-264e16.2 coding upstream 102326 15683157 ~ 15693240 (+)
XLOC_012693 eea1 coding downstream 4107 15841449 ~ 15881931 (+)
XLOC_012694 itpr2 coding downstream 100268 15937610 ~ 16042504 (+)
XLOC_012695 FO834850.1 coding downstream 216113 16053455 ~ 16100225 (+)
XLOC_012696 bhlhe41 coding downstream 288510 16125852 ~ 16130165 (+)
XLOC_012697 ctsd coding downstream 296253 16133595 ~ 16146081 (+)
XLOC_012684 NA non-coding upstream 338819 15453915 ~ 15456747 (+)
XLOC_012683 NA non-coding upstream 342914 15449505 ~ 15452652 (+)
XLOC_012682 NA non-coding upstream 346121 15446623 ~ 15449445 (+)
XLOC_012681 NA non-coding upstream 354094 15433464 ~ 15441472 (+)
XLOC_012700 NA non-coding downstream 472779 16310121 ~ 16315811 (+)
XLOC_012704 NA non-coding downstream 884457 16721799 ~ 16721982 (+)
XLOC_012707 NA non-coding downstream 961413 16798755 ~ 16862419 (+)
XLOC_012709 NA non-coding downstream 1104120 16941462 ~ 16941847 (+)
XLOC_012711 CR925798.1 non-coding downstream 1141286 16978628 ~ 16983066 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_06603570_06626148 NUDT4, NUDT4A coding CI01000013 null 6602062 ~ 6626148 (-)