RNA id: TCONS_00025373


Basic Information

Item Value
RNA id TCONS_00025373
length 882
RNA type mRNA
GC content 0.47
exon number 6
gene id XLOC_012706
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 16749091 ~ 16756144 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTCTGTTATCATCCTGCTGGACTTCTCGAATATTTGTTAGGATAAAACAAATGCCAACAGGGCCTGCAGTGGTGAATGAGGTCTAGAGTTAATAGAGCAGCTCTCCATTTGGAGCCAAGATGGGCCAGCAGCTTTCTGGCCAAGCAGTGACCCGATTACCTGAGAAACTGATCAAACATGTGGGGCTGGTGCGGGACAGTGGATATCTCACCTATGATGAGTTCTTGGGTCGTGTGGCCGAGCTCAATGATGTAACTGCAAAACTCGCCTCTGGTCAAAAAAAACATCTATTGTTTGAAGTGCAGCCTGGATCTGATTCCAGTGCTTTGTGGAAAGTAGCAGTTAGAATAGTGTGCACCAAGATTAATAAGGAGGATGGAATGGTAGAGGCGTCTCGTATTATGAACTTGTACCAGTTTATTCAGCTCTACAAAGACATCACCAGTCAAGCAGCTGAAGTATTTAGTTCAAATGTGGCGGCAGAGGGATCATCTGAAGACACCTGCCAGGCCAGCATGTGGATGGGCAGGGTAAAACAGTTGACTGATGAGGAAGAATGCTGTATCTGCATGGATGGGAAAGCAGATCTTATTCTTCCCTGTGCGCACAGCTTCTGTCAGAAGTGTATTGACAAGTGGAGCGGCCAGAGCCGAAACTGCCCCGTCTGCCGGATTCAGGTGACTGCCGCTAATGAATCCTGGGTCATGTCGGATGCTCCCACAGAGGAAGATGTAGCCGGGTACATTCTCAATCTTGCGGACGAAGCCGGTCACCCACACAGACCTTAAAAATCTAACACTGTGCCACTCTCATGCTCACCATCTCCCCATAAAAGACCACCTATATATAGTTTTCATAGGGTGACTGTGGGTATTTGTAT

Function

GO:

id name namespace
GO:0051865 protein autoubiquitination biological_process
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040625-71 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in protein autoubiquitination. Orthologous to human RNF141 (ring finger protein 141).

Ensembl:

ensembl_id ENSDART00000061265

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027078 lncRNA upstream 433280 16310121 ~ 16315811 (+) True XLOC_012700
TCONS_00025361 lncRNA upstream 555294 16192118 ~ 16193797 (+) True XLOC_012698
TCONS_00025359 lncRNA upstream 610736 16133708 ~ 16138355 (+) True XLOC_012697
TCONS_00027077 lncRNA upstream 1292344 15453915 ~ 15456747 (+) True XLOC_012684
TCONS_00027076 lncRNA upstream 1296439 15449505 ~ 15452652 (+) True XLOC_012683
TCONS_00027079 lncRNA downstream 42611 16798755 ~ 16862419 (+) False XLOC_012707
TCONS_00027080 lncRNA downstream 42911 16799055 ~ 16836065 (+) True XLOC_012707
TCONS_00026886 lncRNA downstream 185318 16941462 ~ 16941847 (+) True XLOC_012709
TCONS_00027081 lncRNA downstream 229946 16986090 ~ 16988214 (+) False XLOC_012712
TCONS_00027082 lncRNA downstream 422349 17178493 ~ 17180077 (+) True XLOC_012716
TCONS_00025371 mRNA upstream 415 16744307 ~ 16748676 (+) False XLOC_012705
TCONS_00025372 mRNA upstream 1703 16744313 ~ 16747388 (+) True XLOC_012705
TCONS_00025366 mRNA upstream 22885 16715864 ~ 16726206 (+) False XLOC_012703
TCONS_00025368 mRNA upstream 24004 16717764 ~ 16725087 (+) False XLOC_012703
TCONS_00025370 mRNA upstream 26233 16722129 ~ 16722858 (+) True XLOC_012703
TCONS_00025375 mRNA downstream 184296 16940440 ~ 16950781 (+) False XLOC_012708
TCONS_00025376 mRNA downstream 187767 16943911 ~ 16950543 (+) True XLOC_012708
TCONS_00025377 mRNA downstream 204822 16960966 ~ 16971684 (+) False XLOC_012710
TCONS_00025378 mRNA downstream 204827 16960971 ~ 16971684 (+) False XLOC_012710
TCONS_00025379 mRNA downstream 207737 16963881 ~ 16967042 (+) True XLOC_012710
TCONS_00025369 other upstream 27109 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025367 other upstream 29901 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025358 other upstream 608743 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025343 other upstream 1036546 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025333 other upstream 1752386 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025380 other downstream 222484 16978628 ~ 16983066 (+) False XLOC_012711
TCONS_00025381 other downstream 222572 16978716 ~ 16983066 (+) False XLOC_012711
TCONS_00025382 other downstream 223421 16979565 ~ 16983066 (+) True XLOC_012711
TCONS_00025387 other downstream 315931 17072075 ~ 17074021 (+) True XLOC_012714
TCONS_00025397 other downstream 781167 17537311 ~ 17566512 (+) False XLOC_012723

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU94174 True 182 lncRNA 0.45 1 CI01000013 6067086 ~ 6067267 (-)
mexican tetra (Astyanax mexicanus) TU94174 True 725 lncRNA 0.42 1 NC_035903.1 38909647 ~ 38910371 (-)