RNA id: TCONS_00026880


Basic Information

Item Value
RNA id TCONS_00026880
length 296
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id XLOC_012681
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 15433464 ~ 15441472 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

catagattgttagatatCTTCCCTATGGCTAATATTTACATTGTAGGTAATGGAACCACAACAGACAGACTCACAAGCGGAATGattagaCTGTGGCATGTGGAGAAATGGAAATCACACCTCAGGAATGACTGGAAATTGATGGTCaggaatttgttttaaaaatcagATCAACAGGTGCATGGATGAACGTCCTTCCAAGATACAAGAATGGTGGTTGGTCTAGATTGTTAAAtaggccttgtctgtgtcaggtttttctttttcagttaaTGGAGAAAGAGCAGAAGAAGGAG

Function

GO:

id name namespace
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0006518 peptide metabolic process biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025332 lncRNA upstream 736886 14693774 ~ 14697233 (+) True XLOC_012674
TCONS_00025329 lncRNA upstream 778938 14652796 ~ 14655181 (+) True XLOC_012672
TCONS_00025328 lncRNA upstream 784824 14647920 ~ 14649295 (+) False XLOC_012672
TCONS_00025327 lncRNA upstream 786230 14645724 ~ 14647889 (+) False XLOC_012672
TCONS_00027070 lncRNA upstream 1194660 14234369 ~ 14239459 (+) True XLOC_012665
TCONS_00027072 lncRNA downstream 121 15434633 ~ 15435194 (+) False XLOC_012680
TCONS_00026883 lncRNA downstream 462 15434974 ~ 15436113 (+) False XLOC_012680
TCONS_00026884 lncRNA downstream 462 15434974 ~ 15436662 (+) False XLOC_012680
TCONS_00026885 lncRNA downstream 2222 15436734 ~ 15437197 (+) False XLOC_012681
TCONS_00027073 lncRNA downstream 2232 15436744 ~ 15440053 (+) True XLOC_012681
TCONS_00025338 mRNA upstream 144122 15271993 ~ 15289997 (+) True XLOC_012679
TCONS_00025336 mRNA upstream 246065 15175478 ~ 15188054 (+) False XLOC_012678
TCONS_00025337 mRNA upstream 246065 15182965 ~ 15188054 (+) True XLOC_012678
TCONS_00025335 mRNA upstream 293000 15132112 ~ 15141119 (+) True XLOC_012677
TCONS_00025334 mRNA upstream 304423 15106518 ~ 15129696 (+) True XLOC_012676
TCONS_00025339 mRNA downstream 181655 15616167 ~ 15635407 (+) True XLOC_012685
TCONS_00025340 mRNA downstream 210047 15644559 ~ 15666942 (+) True XLOC_012686
TCONS_00025341 mRNA downstream 248645 15683157 ~ 15693240 (+) True XLOC_012687
TCONS_00025342 mRNA downstream 271648 15706160 ~ 15718931 (+) True XLOC_012688
TCONS_00025344 mRNA downstream 323863 15758375 ~ 15768336 (+) True XLOC_012690
TCONS_00025333 other upstream 437414 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025324 other upstream 784824 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025309 other upstream 1485195 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 3603099 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3976789 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025343 other downstream 277917 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 699172 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 1281439 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 1287287 16721799 ~ 16721982 (+) True XLOC_012704
TCONS_00025380 other downstream 1544116 16978628 ~ 16983066 (+) False XLOC_012711

Expression Profile

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