RNA id: TCONS_00025327


Basic Information

Item Value
RNA id TCONS_00025327
length 715
lncRNA type retained_intron
GC content 0.34
exon number 2
gene id XLOC_012672
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14633974 ~ 14668398 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTACAATTGCGGTCGCTTGAAGAACTCAACACTGTCGTAGTTTAATGAGCAATATCGCTAGTGGTTTCTTTTGAGTTTTGGTGGCGGGTTAATCTTTGTTATTCGGCGGGAGTCAGTCTTGTcaagttatcaacaatgattcGTAGACGCAGAGAAACAGCAATGGATCTCCGCTTATATTGGAAGAAACTCAAGACATTTTGGAAGACTCTCTCACTCCAGAGGCAGATGATGGAGAACCTGATAATAGCTAAAGCCAGACAAGATGCTGTATCCTTTCCAGTATTGTTATTCTGATGATACGCTTATTCATTGTACTTGAAAGCGATTATGTGGTAAAATGTGTTCGGAgttgaacatgttaaaacatggtAGCTTGTGATCACCCTTTTTTCCAGTCAATACATTTTTCCAATTGGTTATGCTGTTGTAAACACTATTTCACAAGTTTAAGTATTAAGTATTAATAATTTAAGTCTTATTTAAGTTCAAAGTTAAACATCAATGGTTGACCTTTGAGATACTTATGTTGTGCTTATTTATTATCAAGACTGCTGTCATTTGTTATATTTTCCCTGCAAGTATAgtataaaataattgaaatgaaataatatgaaataattaatgtaatttcAGGGCAAACttgtcatttttttcttcaaaatgctCTGCCATTATACTATATGGGAAAACTGAAAAGCAAACATAATGCTGG

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050306-57 Is expressed in brain; forebrain; and neural rod. Orthologous to human VPS9D1 (VPS9 domain containing 1).

Ensembl:

ensembl_id ENSDART00000147465

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027070 lncRNA upstream 406265 14234369 ~ 14239459 (+) True XLOC_012665
TCONS_00027069 lncRNA upstream 1130416 13494245 ~ 13515308 (+) True XLOC_012662
TCONS_00026876 lncRNA upstream 1130571 13494240 ~ 13515153 (+) False XLOC_012662
TCONS_00027068 lncRNA upstream 1485970 13133657 ~ 13159754 (+) True XLOC_012654
TCONS_00026875 lncRNA upstream 1703704 12941800 ~ 12942020 (+) True XLOC_012652
TCONS_00025328 lncRNA downstream 31 14647920 ~ 14649295 (+) False XLOC_012672
TCONS_00025329 lncRNA downstream 4907 14652796 ~ 14655181 (+) True XLOC_012672
TCONS_00025332 lncRNA downstream 45885 14693774 ~ 14697233 (+) True XLOC_012674
TCONS_00026877 lncRNA downstream 784817 15432706 ~ 15436113 (+) False XLOC_012680
TCONS_00026878 lncRNA downstream 785575 15433464 ~ 15437197 (+) False XLOC_012681
TCONS_00025322 mRNA upstream 12416 14619544 ~ 14633308 (+) True XLOC_012671
TCONS_00025320 mRNA upstream 28017 14595546 ~ 14617707 (+) False XLOC_012670
TCONS_00025321 mRNA upstream 31710 14595805 ~ 14614014 (+) True XLOC_012670
TCONS_00025317 mRNA upstream 65937 14564085 ~ 14579787 (+) False XLOC_012669
TCONS_00025319 mRNA upstream 76066 14564086 ~ 14569658 (+) True XLOC_012669
TCONS_00025330 mRNA downstream 36226 14684115 ~ 14688438 (+) True XLOC_012673
TCONS_00025331 mRNA downstream 45793 14693682 ~ 14705999 (+) False XLOC_012674
TCONS_00025334 mRNA downstream 458629 15106518 ~ 15129696 (+) True XLOC_012676
TCONS_00025335 mRNA downstream 484223 15132112 ~ 15141119 (+) True XLOC_012677
TCONS_00025336 mRNA downstream 527589 15175478 ~ 15188054 (+) False XLOC_012678
TCONS_00025309 other upstream 696800 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 2814704 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3188394 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025273 other upstream 3903561 10742049 ~ 10742163 (+) True XLOC_012635
TCONS_00025271 other upstream 3974986 10670661 ~ 10670738 (+) True XLOC_012633
TCONS_00025333 other downstream 341190 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025343 other downstream 1064540 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 1485795 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 2068062 16715951 ~ 16719190 (+) False XLOC_012703
TCONS_00025369 other downstream 2073910 16721799 ~ 16721982 (+) True XLOC_012704

Expression Profile

//