RNA id: TCONS_00025320


Basic Information

Item Value
RNA id TCONS_00025320
length 2301
RNA type mRNA
GC content 0.41
exon number 7
gene id XLOC_012670
representative False

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14595546 ~ 14617707 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACACATTTAACCCTCTCCTCAGTAATAACCCATGCACAGACAGCTgtctcattttctttcttttccttctcTCACTCCGTCTTCTCACTCACTCTTTATGCCACTAGAATTTCTCCTGGATTGGAATTTAACAGGACAGAGAATTTGGACAGGAAGCCACAACATTTAAACCCATCCAACAAGCAAGAAGAGGACGTTTCTGAACAGAAGAACCAACTGTAAAAGTTTTAGGATTGTTGAGAAAGAAGAAGGACGGTCAGGCTGAATGAGCGGGATCATGCAGGGCTGTCAGATGTGGACTGGGTTTGTGCCGGTTCTTCTGATCAGTTTTTTTCTGCTGTTGGAGTCTGGTTCAGGGAATTCACGTATGATCAGGAAGAGGGGACTCAACCAGAAGGACTATGAGTACCCGAACCACCCTCAGACCCCTCAGCACCAGAAGAACGACCGCTGTCCTCCGCCACCGCAAATGCTGCCTGAGCGAGCCTGTGAGGTGCCTGGCTGTCGATCCGATTCTGAATGTGAGAGACACAAACGCTGCTGCTACAACGGCTGCATCTACGCCTGCCTGGAGTCTGTTCAACCTCCGCCCgTGCTGGACTGGTTGGTGCAACCCAAGCCGCGGTGGTTGGGAGGGAATGGCTGGCTTTTAGACGGGCCCGAGGAAGTTCTGCAGGCTGAAGCCTGCAGCACCACTGAGGATGGAGATGAGCCTTTGCTCTGTCCCACCGGATACGAGTGCCACATCATCAACCCAGGAAACCCCTCCGCTGGCATCCCAAACCGAGGACAGTGCATCAAACAGAGGGGAAACTCAGaTGGACGAAGTCTGAGACACAAGTCCTTCAAAGATTATAAGGATTATACAGGAAGTAACTCAAACAATGCAGTGAACTATGAGAAACATCAACATAAGCATTTGGGGTGAGACTGgtgtGGGATCCATTATTGGGGACTGTAGTACCCAGTAATCGCTGACCCTAAGCTGAACCCCATTATCAAATCCAACACAACTGGACAAGCCTTTCTCTTCAGTCTAAAGCAGAGACTGGATCATACAGTATCTGGTGCTTTTCTTAGGTCCTTAATGTGGACTGACAGAAATACAAAGCTAAATATTTCCTACCTCTAACAAAAGCCAAAACCAtacaggagaaagtcttataacTGTGGTTTTTATGCTGCTGAACtcgttgttttgctttttttccccctcattttTGATTTAAACATCAAAATAAGTGTCTTGTTAAATATCTCTCTTCTTCTCATGGAGGCAACTTTTATTAgatcaaaaatacaatatttaatatgTTGATTTGTTGATTTGCTGCTCTGTTATGATCATTTATTATTGGTGCTTAGTCGTTGATAATGGTGCTTATTTTCTGCTTCATATTTTGTGGAAGCTGTGATACATTTTCCTCTTCAGGattatttgatgaatagaaagttcaAAATTAAAAGCATTTATCTGGAGGAAAAAAATGCAGACATTTCAAATCAGTTTAATGTGTGTTTGATCAAtaaagtgttaattaactttttgttgtcttgtttttaaatgatgcttAACACAAATATACATCCACAAAATATGAGACAGCAAAACTGTTTtcaacaataatcataataaatgtttcttgagcaccaaatctGCAAATATTAGTAATTTGTAAAGAATCATTTGACACTGAACACTGGAATAATGATGTTATAATGATGAATCACgcaattaaattcattcattcattttcacagcggaatgaaccgccaactattctggcatatgttttatgcagtggatgcccttccagccgcaacccaatactgggaaacacccatacactcttgcactaACACATGCACTATACTGCTAATTTAGTATATTTAATTGACCCATcccgcatgtcttttggactgttgtaaattgaaataatatttcactttatttcttttttgttgtatttttgatcaactaaattcagccttggtgagcagaagcaAAAACTTTTCAAAGTAGTTTTCATATTAGAATTGGGTCACCATAACCAAATTCAATTTCAGCTGTGTACTGCATTACTGcgaaatatttgtttttcatatggTGCTCCAATCAATAACTgcggttgttgttgttgttgttgtttactcaCAAGTGCAGATGTGTTTTACTCCACGGATGTCTGATAAGCTACACAAATCTGACTTGtggaaaaaaacacattacagCCTACAAAATATTGTACATTGGTGCTTATTGACTGCCTTGTACTTTCAAATAAAACAGTTGACAAAG

Function

GO:

id name namespace
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0030414 peptidase inhibitor activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-070112-352 Predicted to enable peptidase inhibitor activity. Predicted to be involved in regulation of cell growth. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular space. Orthologous to human WFDC1 (WAP four-disulfide core domain 1).

Ensembl:

ensembl_id ENSDART00000080788

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00027070 lncRNA upstream 356087 14234369 ~ 14239459 (+) True XLOC_012665
TCONS_00027069 lncRNA upstream 1080238 13494245 ~ 13515308 (+) True XLOC_012662
TCONS_00026876 lncRNA upstream 1080393 13494240 ~ 13515153 (+) False XLOC_012662
TCONS_00027068 lncRNA upstream 1435792 13133657 ~ 13159754 (+) True XLOC_012654
TCONS_00026875 lncRNA upstream 1653526 12941800 ~ 12942020 (+) True XLOC_012652
TCONS_00025327 lncRNA downstream 28017 14645724 ~ 14647889 (+) False XLOC_012672
TCONS_00025328 lncRNA downstream 30213 14647920 ~ 14649295 (+) False XLOC_012672
TCONS_00025329 lncRNA downstream 35089 14652796 ~ 14655181 (+) True XLOC_012672
TCONS_00025332 lncRNA downstream 76067 14693774 ~ 14697233 (+) True XLOC_012674
TCONS_00026877 lncRNA downstream 814999 15432706 ~ 15436113 (+) False XLOC_012680
TCONS_00025317 mRNA upstream 15759 14564085 ~ 14579787 (+) False XLOC_012669
TCONS_00025319 mRNA upstream 25888 14564086 ~ 14569658 (+) True XLOC_012669
TCONS_00025318 mRNA upstream 25897 14564086 ~ 14569649 (+) False XLOC_012669
TCONS_00025315 mRNA upstream 64913 14477740 ~ 14530633 (+) False XLOC_012668
TCONS_00025316 mRNA upstream 64913 14529005 ~ 14530633 (+) True XLOC_012668
TCONS_00025322 mRNA downstream 1837 14619544 ~ 14633308 (+) True XLOC_012671
TCONS_00025323 mRNA downstream 16267 14633974 ~ 14668398 (+) False XLOC_012672
TCONS_00025325 mRNA downstream 27861 14645568 ~ 14649446 (+) False XLOC_012672
TCONS_00025326 mRNA downstream 27932 14645639 ~ 14667876 (+) False XLOC_012672
TCONS_00025330 mRNA downstream 66408 14684115 ~ 14688438 (+) True XLOC_012673
TCONS_00025309 other upstream 646622 13948810 ~ 13948924 (+) True XLOC_012664
TCONS_00025284 other upstream 2764526 11830905 ~ 11831020 (+) True XLOC_012642
TCONS_00025282 other upstream 3138216 11457213 ~ 11457330 (+) True XLOC_012639
TCONS_00025273 other upstream 3853383 10742049 ~ 10742163 (+) True XLOC_012635
TCONS_00025271 other upstream 3924808 10670661 ~ 10670738 (+) True XLOC_012633
TCONS_00025324 other downstream 25164 14642871 ~ 14649295 (+) False XLOC_012672
TCONS_00025333 other downstream 371372 14989079 ~ 14996705 (+) True XLOC_012675
TCONS_00025343 other downstream 1094722 15712429 ~ 15712545 (+) True XLOC_012689
TCONS_00025358 other downstream 1515977 16133684 ~ 16140348 (+) False XLOC_012697
TCONS_00025367 other downstream 2098244 16715951 ~ 16719190 (+) False XLOC_012703

Expression Profile

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