CI01000306_08284059_08286677 (GNAT1, GNAI2)


Basic Information

Item Value
gene id CI01000306_08284059_08286677
gene name GNAT1, GNAI2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8283644 ~ 8287415 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_08284059_08286677.mRNA
ATATATAAACAGCATCATAAAACATCATAAAAACAGTCCATTTTTTAAGCCAGTCTAAGTTATTGTTTGCTAATAATCTTCCCCTCTGTCATAACTTACTTGTGCTGCTATTGGTTTAGAACTTTATCATATTTTTTGATTGTTTATGAATGAAAATCATATGTATTTGGATTGACATGACAGAAAATTATGACAAAACTATTCCCTTAGCACAGCATGATATATTAAACAGGCTGTTCTTCTGCCCATTACATCTTTATTGCATTTGTGTCAAATTAAATAAGCTGTCTGCTTATTTGGCTGATTGTATGTTCTGTCTTGCTTTGTAGGTTCTTCAGGCCATTTTTATGATTGATTACTTGTGCGTTTGTCTGTTTGTACTGCTGACCGTTTACATGTCTCCTCTCTCCATAGGATGTTTGATGTCGGCGGCCAGCGTTCAGAGAGGAAGAAGTGGATCCACTGTTTCGAAGGGGTGACAGCCATTATCTTTTGTGTGGCCATGAGTGCGTATGACCTGGTGCTGGCTGAGGATGAAGAAATGAACCGAATGCATGAGAGCATGAAGCTCTTCGACAGCATCTGCAACAACAAGTGGTTCACCGAGACCTCCATCATCCTCTTCCTCAACAAGAAAGATCTGTTTGAGCAGAAGATCACACACAGCCCCTTGACCATCTGCTTCCCTGAGTATACAGGTGCCAACAACTACGACGAGGCCGCCGAGTACATCCGCAGCAAGTTTGAGGACCTGAACAAAAAGAAAGAAACCAAGGAGATATACCCTCACTTCACCTGTGCCACAGACACCAAGAATGTGCAGTTCGTTTTCGACGCTGTCACCGATGTCATCATCAAAAACAACCTGAAGGATTATTACTTGAACAGTTTTGATGACCAGAGGAAGCAGGGGTGGAATAAGTCCCGGGCATCTGCACTGGCCAACCACGACTCCTGCTTCCACACCACAACTGATAGCTCAGAGGAGCCAGACACAATTTAAACGATTGCCAACAACCTTAGCCTCTGTCCTCCCTCCCTCCCAACACCGTCCCATCATTGTGTTTGACATTTTAATATCTGTATTAATAACTCCTTGGGCTATGACCACAAATCGCCAACTGTTGTATTATCCATTGTCGATTTTTGTCGTTTATTTTCTCTCCTTATGTTAATTTTTTTTTTTCTTTCGAGTCATAGCAGAGGCAACAAAAAGTTTTTATATGATACTTTCATTTTGAATCTGAAATTTTATTAATTGCATAATTGCTTATTTTTTAAACAACCAGCTGGCATTGGATATTGAGTATGATTGATTGAAAAAGGAAAGCGCTTTTTTTATGATGTTTACAGTACATGACGTCCTTGTTGATAGCAAAACGGAAAGTTTTCCTGCTTGATGATAGCAAATATATCAATACAAGTAATCAGTTCACATCAGCGTAACATTCCTTTTTAAAATTAAATTTAAAAAAAAAAGTACAAAAAACAAAAAAAAACAAAAAAAAAGCACAAAAAAAAGCTTCACAAATGGGGAAAGAACTGCTAAAATGTAACTGATATTTAAAGTATGTACGTAACAGTATCTAACAATCTTTTTTTCTTCTCTTCTGTCTTCTCATTCCTCTTTCTAGCATTCTGTTTGTGCCTTGACTTCCGTTTACAATGGACTTTATTTTCTCCCCCAGTTGTCCTACTGTACGTAAACATTTCTGCTCCAGAAATTTCACATCATGTAAGA

Function

symbol description
gnat1 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Predicted to be involved in G protein-coupled adenosine receptor signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and response to light stimulus. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be part of heterotrimeric G-protein complex. Is expressed in pineal complex and visual system. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1G; congenital stationary night blindness autosomal dominant 3; and night blindness. Orthologous to human GNAT1 (G protein subunit alpha transducin 1).
gnai2 Predicted to enable G protein-coupled receptor binding activity; G-protein beta/gamma-subunit complex binding activity; and GTPase activity. Involved in cell division and positive regulation of cell population proliferation. Located in several cellular components, including centrosome; midbody; and nucleoplasm.

GO:

id name namespace
GO:0000186 activation of MAPKK activity biological_process

KEGG:

id description
K04630 GNAI; guanine nucleotide-binding protein G(i) subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_08284059_08286677.mRNA True 1741 mRNA 0.38 4 8283644 8287415

Neighbor

gene id symbol gene type direction distance location
CI01000306_08262998_08279373 NA coding upstream 3924 8262070 ~ 8279720 (+)
CI01000306_08220196_08227804 NA coding upstream 54495 8219128 ~ 8229149 (+)
CI01000306_08211445_08212302 NA coding upstream 70357 8211445 ~ 8213287 (+)
CI01000306_08178823_08206611 SLC38A3 coding upstream 76532 8178823 ~ 8207112 (+)
CI01000306_08131828_08140454 NA coding upstream 142073 8131533 ~ 8141844 (+)
CI01000306_08295667_08298865 FAM212AA coding downstream 8252 8295667 ~ 8298977 (+)
CI01000306_08354856_08360499 MON1A coding downstream 67441 8354856 ~ 8360816 (+)
CI01000306_08372816_08373112 NA coding downstream 85171 8372586 ~ 8374122 (+)
CI01000306_08378026_08379833 NA coding downstream 90565 8377980 ~ 8380016 (+)
CI01000306_08388107_08410565 MST1R, MST1RB coding downstream 99992 8387407 ~ 8411763 (+)
G435186 NA non-coding upstream 66029 8217401 ~ 8217615 (+)
G435184 NA non-coding upstream 123790 8159569 ~ 8159854 (+)
G435155 NA non-coding upstream 224490 8058947 ~ 8059154 (+)
G435218 NA non-coding downstream 142552 8429967 ~ 8430334 (+)
G435224 NA non-coding downstream 154965 8442380 ~ 8442628 (+)
G435225 NA non-coding downstream 155541 8442956 ~ 8443415 (+)
G435253 NA non-coding downstream 194304 8481719 ~ 8486628 (+)
G435257 NA non-coding downstream 203935 8491350 ~ 8494776 (+)
G434545 NA other upstream 1163785 7119317 ~ 7119859 (+)
G433724 NA other upstream 2153866 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 2175469 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 2297356 5975822 ~ 5986288 (+)
G432958 NA other upstream 2623475 5658928 ~ 5660169 (+)
CI01000306_09225597_09230504 NA other downstream 938150 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 986484 9263589 ~ 9289035 (+)
G435590 NA other downstream 1425434 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 1572798 9860480 ~ 9865724 (+)
G435639 NA other downstream 1592505 9878664 ~ 9884919 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003586 gnai2a coding NC_007122.7 CM002895.2 34921492 ~ 35042194 (+)