XLOC_012797 (ctcf)


Basic Information

Item Value
gene id XLOC_012797
gene name ctcf
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22285992 ~ 22295064 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025526
ATTTTGTGCGGAGCCTACTCTGCAAAAGCGGGAGAGGATTAAAACCGCCGGAGGTGAAGGACGCAATTTTACTCCGTCTCGTACTGAAGGAAGAACAAACCCTGGGCTTTCTGTCGAAATCAACGCGAGAGTAAATCATCAAACGCAGGTATTACCCATGGAAGGGGGACCGACTGAGGCCGTGGTGGAAGATGCAGGGGATGCTTTCAAGGCCAAGGAGTGCAAGACATACCAAAGGCGGCGGGAAGATGAGGAGGTGGGAGCCGAGCTGCTGCAGGCTGCTGTGATTGAGCAAGCACAGGCTGAAGTTGAGCCTGTGGTGGAGGCCCAGCAACAGCTGGTTGAGAGTGTAGTTAGTGTCAACAGCAGCGTGGACATGATGATGATGGAAACCCTGGACCCTGCCTTGCTGCAGATGAAGACAGAAGTCATGGAGGCTGCCGTCGGGGCACCTGTCGCTGTGGCTGGTGCTGCTCATGAAGCCACAGTCACTACAGTCGATGATACACAGATCATCACCCTGCAGGTGGTGAATATGGAGGAGCAGCAGTTGGGCTTGGGAGAGCTGCAGCTGGTGCAGGTGCCTGTTTCTGCTGTGCCTGTCACTGCCGCCACCGTGGAAGAGCTGCAGGGGACACTGGTGGATGCAACTGCCATGCCTAAAGATGGGGAGCCGGTCATCTGTCACACCCTGCCATTGCCTGAGGGCTTTCAGgtgGTCAAAGTGGGTGCAAACGGAGAAGTAGAAACTGTGGAGCAAGATGAGCTCCAGCCCCAAGACGATCAGCCTCCGCAtcaggaggaggaagaagaaatgGCTGAACCCCAAAATGAAGACCCCGCCTGGTCCAAAGATCCCGACTACACACCTCCTGTTAAAAAGGTCAAGAAGACGAAGAAGAGCAAGCTGCGCTACAACACAGAGGGTGATAAAGACATGGATGTGTCTGTGTATGATTTCGAGGAGGAGCAGCAGGAGGGTCTGCTTTCTGAAGTCAATGCTGAGAAAGTTGTGGGTAACATGAAACCACCCAAACCAACCAAAATCAAGAAGAAAGGTGTTAAGAAGACATTCCAGTGTGAGCTGTGCAGTTACACTTGCCCACGCCGGTCCAATCTGGACCGCCACATGAAGAGCCACACAGACGAGAGGCCTCACAAGTGCCATCTTTGCGGACGAGCATTTAGGACTGTGACTTTGCTGAGGAACCATCTTAATACCCACACAGGCACCAGACCACATAAGTGCACTGACTGTGACATGGCCTTTGTCACCAGTGGAGAGCTGGTGCGACACAGACGCTACAAGCACACTCATGAGAAACCGTTCAAGTGCTCTATGTGTGACTACGCCAGTGTAGAGGTTAGCAAGCTGAAGCGCCACATTCGCTCCCACACAGGAGAGCGTCCGTTCCAGTGCAGTCTGTGCAGTTATGCCAGCAGAGATACATATAAGCTGAAGAGACACATGAGGACCCACTCAGGAGAGAAGCCCTATGAGTGCTATATCTGTCATGCACGGTTTACCCAGAGTGGCACCATGAAGATGCACATTCTGCAGAAGCACACAGAAAATGTGGCGAAATTTCACTGCCCTCACTGCGACACCGTCATTGCCCGCAAGAGTGATCTTGGTGTGCATCTCCGTAAGCAGCATTCCTACATTGAACAGGGCAGAAAGTGCCGTTACTGTGATGCTGTGTTCCACGAGCGCTACGCTCTTATCCAGCATCAGAAATCCCACAAAAATGAGAAACGCTTCAAGTGTGATCAGTGTGACTATGCATGCCGCCAGGAGCGTCACATGGTCATGCACAAGCGCACACATACTGGGGAGAAGCCATATGCCTGCAGCCAATGTGAGAAGACCTTTAGGCAGAAACAGCTGTTGGACATGCACTTTCGCCGCTATCATGACCCCAACTTTGTACCCACATCCTTTGTATGCACCAAGTGCGGAAAGACCTTCACTCGCAGGAATACCATGGCAAGACATGCAGAGAACTGCACTGGTATGGATTCTGCTGATGGAGAGAACGGAACTCCACCCAAAAGGGGCCGTGGAGGCAGAAAGAGGAAGATGCGGTCTAGAaaggatgatgacgatgatgatgacagTGATGAGCATGGTGAACCTGACCTTGATGACATTGATGAAGAGGATGAGGATGACCTTCTTGATGAAGACCAGATGGGTTTGCTAGACCAGGCTCCACCCAGTGTTCCAATCCCCGCACCAGCTGAGCCACCAATCAAGAGGAAACGGGGCAGACCCCCTAAGAACGCACCCAAGGTCTCTCCTACCAAGTCCATTACCAAAACCACCACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATTGAGAACATCATTGTGAAGAAGGAGCCAGAGGGCACTGACGCAGTTGTAGCTGCCCAGCCGATCATAGAGGAAGTGGAGGCGGTTGAGGCCGATGTAGAAACGGTGCAGTTAACAGTCCCAGAAGCTGCACCTAACGGTGATCTTACTCCTGAAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATACGTGTACACACACAGGCTGATCACCCATGCTTGCATAAATGCACATCCCCATATGCGTcccttgaatatatatatatatatatatctctatctaTTTACACATGCTCACATACTTCACTTTCCTCACCTCCTTTAATACTGCGCTGTGTCCTAATGTCCTGCATCAAGATTCTTAAGGACTCCATTATTCCACTGTTTGCTACAAAACCCCAAATGCCCGATGTCCTAAAGTTCTTACACAGTGTCTTCTCATGACGATCACAAAACTGAGCTTTTCTACTGTTCCCGTCACACCAGTAGTTCATTGTACGTGgtgggatgatttttttttttgagagcagAAGTGTGCTCGTGACATACATCTAGACTTTCTTTACCATGCTAACCAACCGTTTTCATTTGACAATTCAAATCTGACATTACCATGGCAATATTGAGAGATGATATATCATTTTGTGCCTGGTCGAGCATTGACTTTCCTCAATTTGCTTCACTGCTGTAGAAATGGGTGTTTTTGCCCCATCTGTCTGAGAAAATCCTCTCAATGTTTGACATTTATGATGACTTTCTTTGCTGTTTGTTCCTCATGTGCTCTTTCACTGGTCACAGTTGATGATGTTAGAGAGCGTAGAAATGTAGCCATCAGATTATCAAGCCAGGGACGAtgacatccatccattcataagttcaacaaaagaaaaagaaaacctgCGGTTGATAAAGTTGTATAAAACAGGTAATCTTGGCTAGTCTTGcttgtaaataatttttattttctgttttattatgaACGTTTTAATCTTTTTCTAGTGAATTGATCACCTTGAATGCTAGGGCAATGGCTTTTAACGGTAGTTGTTTGGAAACATGCCACTGAAGGCTTTCAAATTActtgtggggaaaaaaataaaagcctgAAGAATCATGTAGGCTGCATATAACCCCTTTTCTTCTCTGTCCTTCTGTAGCTTGAATTTGTGCATTTGAGTCTGCTCCACTCGCTTGATGGGGAGGGTTGCTTAATCTCTTTAACCAGCGCTTTACAGGGCGAAGAGTGGCTTTTAATGTTGTTCCACCTGACGAATAGGCTTCCATGTTGGATTTTGTTCTAGCTTTTGTAAAAGGAGGAAAAGGGACAGAACTGGGCAGGTACAGCGAGAAGCGCATGTCTCCGATCGCTTGGATCCATTTCCATGTGTGGTCATGTTCCCGACAGCCACCCCAAATTTGAAAGCGTGATCCAAGTTTATGATTTCATGGGATTCCGAGAGGAGACGTAAAGTTTACAATAGGTTTTTCAGACCACATTTAATTTAAGAAGTTTAATACGAGTGTTCGAGGAAGCtattttgatacaaaatgttTCTAGAAGGGGAAGCTTGGATaggatatttgtaaaaaaaaaaaaagtttgtcacTTGTTCAAAAGAGCAATGTCCTTTTATTTCTGATCTTTTGTTTTTCTGATTGAGAATGAAGTTTTTCTCCAACATGTAATTGCatttaaattgcttttttttttttttttttttttttaagctcttAAAATTCTAggttaatgcttttttttttacacctagCTGTACTGTGTGAATTTTACAATGATCAGAAAACCAACCTTATAAAGACATTTATTATGGCTGGGTGGGGTGTAGAGGTAAGATGGTGTAGAGAATGTATTGCTGTACagctaataaaaaa
>TCONS_00025527
ATTAAAACCGCCGGAGGTGAAGGACGCAATTTTACTCCGTCTCGTACTGAAGGAAGAACAAACCCTGGGCTTTCTGTCGAAATCAACGCGAGAGTAAATCATCAAACGCAGGTAGAGTCAGGTAGTAAGAAGCAGAGTTAAGGCAGATAGGTCATTCATCGGAGACAGAAAGTGGTCGAGGCGCAGTGGTAGAGAGATGAAGTGTTCCATATTGGTGCAGGTATTACCCATGGAAGGGGGACCGACTGAGGCCGTGGTGGAAGATGCAGGGGATGCTTTCAAGGCCAAGGAGTGCAAGACATACCAAAGGCGGCGGGAAGATGAGGAGGTGGGAGCCGAGCTGCTGCAGGCTGCTGTGATTGAGCAAGCACAGGCTGAAGTTGAGCCTGTGGTGGAGGCCCAGCAACAGCTGGTTGAGAGTGTAGTTAGTGTCAACAGCAGCGTGGACATGATGATGATGGAAACCCTGGACCCTGCCTTGCTGCAGATGAAGACAGAAGTCATGGAGGCTGCCGTCGGGGCACCTGTCGCTGTGGCTGGTGCTGCTCATGAAGCCACAGTCACTACAGTCG
>TCONS_00025528
GGTAGTGGTACAAAAACACGATTAACCATCTCAGAATGCCCTCTTGCTGTGGAAAACCATAAGGGTGTTTTGAAACGTGTGGAGGTATTACCCATGGAAGGGGGACCGACTGAGGCCGTGGTGGAAGATGCAGGGGATGCTTTCAAGGCCAAGGAGTGCAAGACATACCAAAGGCGGCGGGAAGATGAGGAGGTGGGAGCCGAGCTGCTGCAGGCTGCTGTGATTGAGCAAGCACAGGCTGAAGTTGAGCCTG
>TCONS_00025529
TGCACCGTTTTGTCTGTTTATTGTATCGGTGGCCAAATGCGCGCATTCATGAGGAAGTAGAAGAGAATCGGTTCAGATGATGCTTTCTGGCGACGAATCAAGAGTTCAAAACCTGGCTTTGCTATAATGAAAGTCACATTCAAGTTTTGCAAGTTTTTGGAGATTTTGCGcttatatttattatacttatggttattatatttatgcaaaatgtaaatggtaaatttttatttttacacgtCTGTGTAAATGTTTAATGAACATTTATGTGAGATGCGCTGTGTgcaatttaattaacattaaatggCATAAATGCGGTGTGATTTAGCTTTGACTTGTATGAAGTGTTAGAGAAGTGTGGGTTATTTTGCACTTTGCTTGATTTGTTTGCATCCCAACAGGTAGAGTCAGGTAGTAAGAAGCAGAGTTAAGGCAGATAGGTCATTCATCGGAGACAGAAAGTGGTCGAGGCGCAGTGGTAGAGAGATGAAGTGTTCCATATTGGTGCAGGTATTACCCATGGAAGGGGGACCGACTGAGGCCGTGGTGGAAGATGCAGGGGATGCTTTCAAGGCCAAGGAGTGCAAGACATACCAAAGGCGGCGGGAAGATGAGGAGGTGGGAGCCGAGCTGCTGCAGGCTGCTGTGATTGAGCAAGCACAGGCTGAAGTTGAGCCTGTGGTGGAGGCCCAGCAACAGCTGGTTGAGAGTGTAGTTAGTGTCAACAGCAGCGTGGACATGATGATGATGGAAACCCTGGACCCTGCCTTGCTGCAGATGAAGACAGAAGTCATGGAGGCTGCCGTCGGGGCACCTGTCGCTGTGGCTGGTGCTGCTCATGAAGCCACAGTCACTACAGTCGATGATACACAGATCATCACCCTGCAGGTGGTGAATATGGAGGAGCAGCAGTTGGGCTTGGGAGAGCTGCAGCTGGTGCAGGTGCCTGTTTCTGCTGTGCCTGTCACTGCCGCCACCGTGGAAGAGCTGCAGGGGACACTGGTGGATGCAACTGCCATGCCTAAAGATGGGGAGCCGGTCATCTGTCACACCCTGCCATTGCCTGAGGGCTTTCAGgtgGTCAAAGTGGGTGCAAACGGAGAAGTAGAAACTGTGGAGCAAGATGAGCTCCAGCCCCAAGACGATCAGCCTCCGCAtcaggaggaggaagaagaaatgGCTGAACCCCAAAATGAAGACCCCGCCTGGTCCAAAGATCCCGACTACACACCTCCTGTTAAAAAGGTCAAGAAGACGAAGAAGAGCAAGCTGCGCTACAACACAGAGGGTGATAAAGACATGGATGTGTCTGTGTATGATTTCGAGGAGGAGCAGCAGGAGGGTCTGCTTTCTGAAGTCAATGCTGAGAAAGTTGTGGGTAACATGAAACCACCCAAACCAACCAAAATCAAGAAGAAAGGTGTTAAGAAGACATTCCAGTGTGAGCTGTGCAGTTACACTTGCCCACGCCGGTCCAATCTGGACCGCCACATGAAGAGCCACACAGACGAGAGGCCTCACAAGTGCCATCTTTGCGGACGAGCATTTAGGACTGTGACTTTGCTGAGGAACCATCTTAATACCCACACAGGCACCAGACCACATAAGTGCACTGACTGTGACATGGCCTTTGTCACCAGTGGAGAGCTGGTGCGACACAGACGCTACAAGCACACTCATGAGAAACCGTTCAAGTGCTCTATGTGTGACTACGCCAGTGTAGAGGTTAGCAAGCTGAAGCGCCACATTCGCTCCCACACAGGAGAGCGTCCGTTCCAGTGCAGTCTGTGCAGTTATGCCAGCAGAGATACATATAAGCTGAAGAGACACATGAGGACCCACTCAGGAGAGAAGCCCTATGAGTGCTATATCTGTCATGCACGGTTTACCCAGAGTGGCACCATGAAGATGCACATTCTGCAGAAGCACACAGAAAATGTGGCGAAATTTCACTGCCCTCACTGCGACACCGTCATTGCCCGCAAGAGTGATCTTGGTGTGCATCTCCGTAAGCAGCATTCCTACATTGAACAGGGCAGAAAGTGCCGTTACTGTGATGCTGTGTTCCACGAGCGCTACGCTCTTATCCAGCATCAGAAATCCCACAAAAATGAGAAACGCTTCAAGTGTGATCAGTGTGACTATGCATGCCGCCAGGAGCGTCACATGGTCATGCACAAGCGCACACATACTGGGGAGAAGCCATATGCCTGCAGCCAATGTGAGAAGACCTTTAGGCAGAAACAGCTGTTGGACATGCACTTTCGCCGCTATCATGACCCCAACTTTGTACCCACATCCTTTGTATGCACCAAGTGCGGAAAGACCTTCACTCGCAGGAATACCATGGCAAGACATGCAGAGAACTGCACTGGTATGGATTCTGCTGATGGAGAGAACGGAACTCCACCCAAAAGGGGCCGTGGAGGCAGAAAGAGGAAGATGCGGTCTAGAaaggatgatgacgatgatgatgacagTGATGAGCATGGTGAACCTGACCTTGATGACATTGATGAAGAGGATGAGGATGACCTTCTTGATGAAGACCAGATGGGTTTGCTAGACCAGGCTCCACCCAGTGTTCCAATCCCCGCACCAGCTGAGCCACCAATCAAGAGGAAACGGGGCAGACCCCCTAAGAACGCACCCAAGGTCTCTCCTACCAAGTCCATTACCAAAACCACCACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATTGAGAACATCATTGTGAAGAAGGAGCCAGAGGGCACTGACGCAGTTGTAGCTGCCCAGCCGATCATAGAGGAAGTGGAGGCGGTTGAGGCCGATGTAGAAACGGTGCAGTTAACAGTCCCAGAAGCTGCACCTAACGGTGATCTTACTCCTGAAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATACGTGTACACACACAGGCTGATCACCCATGCTTGCATAAATGCACATCCCCATATGCGTcccttgaatatatatatatatatatatctctatctaTTTACACATGCTCACATACTTCACTTTCCTCACCTCCTTTAATACTGCGCTGTGTCCTAATGTCCTGCATCAAGATTCTTAAGGACTCCATTATTCCACTGTTTGCTACAAAACCCCAAATGCCCGATGTCCTAAAGTTCTTACACAGTGTCTTCTCATGACGATCACAAAACTGAGCTTTTCTACTGTTCCCGTCACACCAGTAGTTCATTGTACGTGgtgggatgatttttttttttgagagcagAAGTGTGCTCGTGACATACATCTAGACTTTCTTTACCATGCTAACCAACCGTTTTCATTTGACAATTCAAATCTGACATTACCATGGCAATATTGAGAGATGATATATCATTTTGTGCCTGGTCGAGCATTGACTTTCCTCAATTTGCTTCACTGCTGTAGAAATGGGTGTTTTTGCCCCATCTGTCTGAGAAAATCCTCTCAATGTTTGACATTTATGATGACTTTCTTTGCTGTTTGTTCCTCATGTGCTCTTTCACTGGTCACAGTTGATGATGTTAGAGAGCGTAGAAATGTAGCCATCAGATTATCAAGCCAGGGACGAtgacatccatccattcataagttcaacaaaagaaaaagaaaacctgCGGTTGATAAAGTTGTATAAAACAGGTAATCTTGGCTAGTCTTGcttgtaaataatttttattttctgttttattatgaACGTTTTAATCTTTTTCTAGTGAATTGATCACCTTGAATGCTAGGGCAATGGCTTTTAACGGTAGTTGTTTGGAAACATGCCACTGAAGGCTTTCAAATTActtgtggggaaaaaaataaaagcctgAAGAATCATGTAGGCTGCATATAACCCCTTTTCTTCTCTGTCCTTCTGTAGCTTGAATTTGTGCATTTGAGTCTGCTCCACTCGCTTGATGGGGAGGGTTGCTTAATCTCTTTAACCAGCGCTTTACAGGGCGAAGAGTGGCTTTTAATGTTGTTCCACCTGACGAATAGGCTTCCATGTTGGATTTTGTTCTAGCTTTTGTAAAAGGAGGAAAAGGGACAGAACTGGGCAGGTACAGCGAGAAGCGCATGTCTCCGATCGCTTGGATCCATTTCCATGTGTGGTCATGTTCCCGACAGCCACCCCAAATTTGAAAGCGTGATCCAAGTTTATGATTTCATGGGATTCCGAGAGGAGACGTAAAGTTTACAATAGGTTTTTCAGACCACATTTAATTTAAGAAGTTTAATACGAGTGTTCGAGGAAGCtattttgatacaaaatgttTCTAGAAGGGGAAGCTTGGATaggatatttgtaaaaaaaaaaaaagtttgtcacTTGTTCAAAAGAGCAATGTCCTTTTATTTCTGATCTTTTGTTTTTCTGATTGAGAATGAAGTTTTTCTCCAACATGTAATTGCatttaaattgcttttttttttttttttttttttttaagctcttAAAATTCTAggttaatgcttttttttttacacctagCTGTACTGTGTGAATTTTACAATGATCAGAAAACCAACCTTATAAAGACATTTATTATGGCTGGGTGGGGTGTAGAGGTAAGATGGTGTAGAGAATGTATTGCTGTACagctaataaaaaatattgtcctaattccatgtgtgtttgtttttttagttgcCTTTTTTCAATGGGTACTTGATGCATCTCAAAATCTAATACTTTACATTTGTACACCTACAATCTACAAACATATAATCTTAATCTACAAATTTATAATCTTAATCTACAATTTTATAATCTTAATGATTATGTTTTCACAACAGGCCAATTTCAGAGCAGATTCACTTTGAAATGTAGTAAACAACGGGTAAGAAAAATATTTCTTTTGTATTTGGAAACTAGTAACTATTGGtaacaaaaatatgaatttactatcttttttaaacaaatattacattattattgtgttgatttaattattttacattaaaagtgTGCATGGTAAACCCACAAAGCAAGCTCAAGTTATGCAGAAATTCCCATAATAATCTCTAAAGCTAAATGaatgtattgtgtttattaaatgtattacatttttaggtgTACACTTTAACATTTCTACCAGTGACTACTGTGTTCCTTACTTTAACAGAAACGTTTAATTGGTGTGTGTACTTTGTTTATCTGTTTACTTGCATGATAATTTATTGTAACTGACAGAAGGGGTGTTTTTTCTTCTGTGTGTTAGCATGCAGGCTATGTTCATTTTGgagtgttgtattttttttaaacggtCTGTGACCCTTTTAGCAGAAGGACactagttatgtttccatccaaagatgtgaattaaacaTGCACAAATCACTAACCACGGCCTCTTTCAAggcatattattgttattaggtagatattaaatgttaatttaaaattactctaaaaaagaaataaaaacacctCAGTTTTAggaattacaataaaaaaacaattttttgtaCTCTTTAATTCCCAGCATAAAAACACGAGGTCAGAAAATCACCAAACATCAAGTCACTTACTTTAGCCAATAAACTTCATATATTTTCATCATTCTTGATCACCTAATTCAGATCAGCttttatggctgcacaatataaacTTCCAGGATGTCCCTAACACACAGGCACAttgatgtacagttaaagtcattgTTATTAAttgaaatttgtattcttttttaaatatttcctaagtgctgtttaacagatcaatgacattttcacagaatTTCCTAATATATTTTTCCTTCTGACTGGGGAAAGCATTTTAGTCAACATTATTACTCCATTAAGATTTTGTGTCCTCTTTCTGATTGGCTACAGATCAAGCAacaactgttgtccaatgacttggtttacatagttaagcctttaaattgcgcTTTAAACTGAATACTGTTATCTTAAAAAACAAGTAAATGCATAATATGCACTGTCACCAAAGAAAAATGAGTTgttttaaattagttattaaaactattatgttgtcTTCTctctggcgacgcagtggtgcaggaggtagtgttgttgcctcacagcaagaaggtagctggttcgagcctcggctgggtcagttggcgtttctggagtttacatgttctcactgtgtttgcgtgggtttcctccaggtgctctggttttccgcacagtcgaaagacatgcggtacgggtgaattgggtaggctaaattgtccgtagtgtatgagtgtgtgtggatgggcattcgctgcataaaaacgtgctagataagttggcggttcattccgctgtggtgacccaacaGTATATTaaac

Function

symbol description
ctcf Enables chromatin binding activity. Acts upstream of or within regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Is expressed in brain; digestive system; immature eye; notochord; and somite. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 21. Orthologous to human CTCF (CCCTC-binding factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040624-5 Enables chromatin binding activity. Acts upstream of or within regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Is expressed in brain; digestive system; immature eye; notochord; and somite. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 21. Orthologous to human CTCF (CCCTC-binding factor).

Ensembl:

ensembl_id ENSDARG00000056621

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025526 False 4265 mRNA 0.47 12 22285992 22293372
TCONS_00025527 False 572 mRNA 0.54 3 22286029 22288543
TCONS_00025528 False 253 mRNA 0.54 2 22287084 22288360
TCONS_00025529 True 6319 mRNA 0.42 12 22287188 22295064

Neighbor

gene id symbol gene type direction distance location
XLOC_012796 ripor1 coding upstream 2594 22138924 ~ 22283398 (+)
XLOC_012795 si:ch73-186j5.2 coding upstream 158007 22123072 ~ 22127985 (+)
XLOC_012794 zgc:158868 coding upstream 169614 22109379 ~ 22116378 (+)
XLOC_012793 NA coding upstream 185764 22099619 ~ 22100228 (+)
XLOC_012792 CT573204.1 coding upstream 204239 22078144 ~ 22081753 (+)
XLOC_012798 carmil2 coding downstream 7571 22302635 ~ 22396371 (+)
XLOC_012799 cfdp1 coding downstream 120987 22416051 ~ 22486767 (+)
XLOC_012800 bcar1 coding downstream 209136 22504200 ~ 22688073 (+)
XLOC_012801 gnao1a coding downstream 498401 22793465 ~ 22975655 (+)
XLOC_012802 cbfb coding downstream 699049 22994113 ~ 23072665 (+)
XLOC_012790 NA non-coding upstream 812628 21469636 ~ 21473364 (+)
XLOC_012787 BX571884.1 non-coding upstream 1094208 21191665 ~ 21191784 (+)
XLOC_012786 NA non-coding upstream 1116244 21163424 ~ 21169748 (+)
XLOC_012805 NA non-coding downstream 1163865 23458929 ~ 23463541 (+)
XLOC_012806 AL805905.1 non-coding downstream 1177082 23472146 ~ 23472260 (+)
XLOC_012807 NA non-coding downstream 1516320 23811384 ~ 23828058 (+)
XLOC_012808 NA non-coding downstream 1581376 23876440 ~ 23889042 (+)
XLOC_012809 CR847971.1 non-coding downstream 2182462 24477526 ~ 24483285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_02912132_02916617 CTCF coding CI01000013 null 2911191 ~ 2916617 (-)
bowfin (Amia calva) AMCG00020364 NA coding CM030127.1 CM030127.1 17261682 ~ 17271532 (+)