CI01000013_02912132_02916617 (CTCF)


Basic Information

Item Value
gene id CI01000013_02912132_02916617
gene name CTCF
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2911191 ~ 2916617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_02912132_02916617.mRNA
AGTTTATCGCCTGAAAACAGCCGAATCGCCGCAGTCGTCGGTCTCAGTGCGACCGCTCACTCTTATTGAAAAGACTAACCTCAAGCAACAAACGACTGAAGGGATAAAAACTGTAGAGAGCTCCCTCTACAACCCGACTGGTAGTGGTACAAAAACACGATTAACCATCGCAGAATGCCCTCTTGCTGTGGAAAATCATAAGGGTGTTTTAAAACGTGTGAAGGTATTACCCATGGAAGGGGGACCGACTGAGGCAGTGGTGGAAGATGCAGGGGATGCTTTCAAGGCCAAGGAATGTAAGACATACCAAAGGCGACGAGAAGATGAGGAAGTAGGAGCCGAATTGCTGCAGGCTGCTGGGTTAGAGCAAGCCCAGGTTGAAGGAGAGCCTGTGGTGGAGGCCCAGCAACAGTTGGTCGAGAGTGTCGTTAATGTCAACAGCAGTGTGGAGATGATGGTGATGGACTCCCTGGACCCTGCCCTCCTCCAGATGAAGACAGAAGTCATGGAGGCTGCTGTCGGAGCACCTGTTGGTGCTGCCCATGAAGCCACGGTTACAACTGTCGATGACACTCAGATCATCACTCTGCAGGTAGTGAACATGGAGGAGCAGCAGTTGGGCTTGGGAGAGTTGCAGCTAGTGCAGGTGCCTGTTTCTGCTGTGCCCGTCACTGCTGCCACTGTGGAAGAGCTGCAAGGGACACTGGTTGATGCCACTGCCATGCCTAAAGATGGGGAGCCTGTCATCTGTCACACCCTGCCATTGCCTGAGGGCTTCCAGGTGGTCAAGGTGGGTGCAAATGGAGAAGTGGAAACTGTGGAGCAAGATGAGCTCCAGGCCCAAGAGGATCAGCCTCCACAGCAGGAGGAGGAGGAGATGGCTGAAGCCCAAAATGAAGACCCCACGTGGTCTAAAGATCCAGATTACACACCCCCTGTTAAAAAGGTTAAGAAGACTAAGAAAAGCAAGCTGCGCTACAACACGGAGGGCGATAAAGACATGGATGTGTCTGTGTATGACTTTGAGGAGGAGCAGCAGGAGGGACTGCTCTCTGAAGTCAATGCTGAGAAAGTTGTGGGTAATATGAAACCGCCCAAACCAACCAAAATCAAAAAGAAAGGTGTTAAGAAGACATTCCAGTGTGAGCTGTGCAGTTACACCTGCCCGCGCCGTTCCAATCTGGATCGCCACATGAAGAGCCACACGGATGAGAGGCCTCACAAGTGCCATCTTTGTGGACGAGCCTTCAGGACTGTGACATTGCTGAGAAACCATCTCAACACCCACACAGGCACCAGACCACATAAGTGCACTGACTGTGACATGGCCTTCGTCACCAGTGGAGAGCTGGTGCGACACAGACGCTACAAGCACACTCATGAGAAACCATTCAAGTGCTCCATGTGTGACTATGCCAGTGTTGAGGTTAGCAAGCTGAAGCGGCACATTCGCTCCCACACTGGAGAACGTCCGTTCCAGTGCAGTCTGTGCAGCTATGCCAGCAGAGATACCTATAAGCTGAAGAGACATATGAGGACCCACTCAGGAGAGAAGCCCTATGAGTGCTATATCTGTCATGCTCGTTTTACCCAGAGTGGTACCATGAAGATGCACATTCTGCAGAAGCACACAGAAAATGTGGCAAAATTTCACTGCCCCCACTGCGACACAGTTATTGCTCGCAAGAGCGATCTCGGTGTGCACCTCCGTAAGCAGCATTCCTACATTGAGCAGGGCAGGAAGTGTCGTTACTGTGATGCTGTGTTCCATGAGCGCTATGCTCTCATCCAGCATCAGAAGTCCCACAAAAATGAGAAACGCTTCAAGTGTGACCAGTGTGACTATGCGTGCCGTCAGGAGCGTCACATGGTCATGCACAAGCGCACCCATACTGGGGAGAAGCCATACGCCTGCAACCAATGTGAGAAGACTTTCAGGCAGAAACAGCTCCTGGATATGCACTTTCGGCGCTACCATGACCCCAACTTTGTACCCACATCCTTTGTTTGCACCAAGTGCGGAAAGACCTTCACTCGCAGGAATACTATGGCCAGACATGCAGAGAACTGCACTGGTATGGATTCTACTGATGGAGAGAATGGAGCTCCACCTAAAAGGGCTCGTGGTGGCAGAAAGAGGAAGATGCGCTCTAGAAAGGATGATGATGACGATGATAGCGATGAGCATGGAGATCCTGACCTTGATGACATTGATGAAGAGGAAGAGGATGAGCCTCTTGATGATGAGCAGATGGATGTGGAACAGGCTCCACCCAGCGTTCCCATCCCCGCACCAGCTGAACCTCCTGTCAAGAGGAAACGGGGCAGACCCCCCAAGAACGCACCCAAGGCATCTCCTACAAAGTCTATCGCCAAAACCACCACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATTGAGAACATCATTGTGAAGAAGGAGCCTGAGGGCTCTGATGCAGTTGTAGCTGCCCAGCCAGTGGTAGAGGAAGTGGAGGCAGTCGAGGCTGGTGTAGAAACAGTGCAGCTAGCTGTCCCTGAAGCTGCACCTAATGGTGATCTTACTCCTGAAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATATGTGTGCGCACACAGGCTGATCACACATGCTTGCATAAATGCACATCCCCATATGTGTCCCCTGAATATATATATATACATATACACACATGCTCACATCCTTTTTTTTTTTTTTTTTTCTTCCCCTCACCTCCTTTAATTCCACGCCAAGTCCTCATGTCCTGCATCAAATCTCTTAAGGACTCCATTGTTCCGCTACCTTTTCCTATAAAACCCTACTTAAATTTTGTCTTCTCATGACGGATCACAAAGCTGCGCTTTTCTACTGTTTCTATCACACCAGTAGTTCAACTGCTGAGTTTTTTTTTTTTTTTTTTTGCTGTGTACTTTGTACGTGGAGAGGCCAGATGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGCAGGAATGTCTCTGACATTACATGGTATAATACATGCATCTAGACTTTTCTTTACCCATCTAACCTTCTGTCTTCATTTGTCATTTTAAATCTGACATTACCATGGCAATATTGAGAAACAATATCATTTTGTGCCTGGTCAAGCCTTGATATCTAGAATCGCTGTCACTGCTGTAGAAAATCCTCTCAATGTTTGACATTAATGATGACTTTTATTCGCTGTTTGTTCCTCATGTGCTCTTTCACTGGTCACAGATGATAATGTTAGAGAGCGTAGAAATGTAGCCGCCTAATTATCAAGCCAGGGACGATGACATCCATCCATATGTTAAAAAAAAAACCTGCGGTTGATAAATTTGTACAAAAAAGGTCATCTTGGCTAGTCTTGCTTGTAAATAATTTTTATTTTCTGTTTTATTATGAACATTTTAATCTTTTTCTAGTGAATTGATGACCTTGAATGCTAGGGCAATGGCTTTTAACAGTAGTTGTTTGGAAACATGCCATTGAAAGCTTTCAAATTACTTGTGGGGCAAAATAAA

Function

symbol description
ctcf Enables chromatin binding activity. Acts upstream of or within regulation of transcription by RNA polymerase II and skeletal muscle tissue development. Is expressed in brain; digestive system; immature eye; notochord; and somite. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 21. Orthologous to human CTCF (CCCTC-binding factor).

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_02912132_02916617.mRNA True 3552 mRNA 0.48 12 2911191 2916617

Neighbor

gene id symbol gene type direction distance location
CI01000013_02870258_02903686 CARMIL2, RLTPR coding downstream 7505 2870258 ~ 2903686 (-)
CI01000013_02834348_02858912 CFDP1 coding downstream 52279 2834254 ~ 2858912 (-)
CI01000013_02733870_02751654 NA coding downstream 159537 2733706 ~ 2751654 (-)
CI01000013_02718442_02730091 BCAR1 coding downstream 179602 2718306 ~ 2731589 (-)
CI01000013_02606100_02629603 GNAO1, GNAO1A coding downstream 281588 2606100 ~ 2629603 (-)
CI01000013_02919679_02944235 FAM65A coding upstream 2972 2919589 ~ 2944235 (-)
CI01000013_02999657_03003223 NA coding upstream 82656 2999273 ~ 3003580 (-)
CI01000013_03051289_03084843 RANBP10 coding upstream 133850 3050467 ~ 3085258 (-)
CI01000013_03102811_03111426 DNAH6 coding upstream 185992 3102609 ~ 3111426 (-)
CI01000013_03275705_03371030 NECAB2 coding upstream 359088 3275705 ~ 3371030 (-)
G79779 NA non-coding downstream 26227 2884672 ~ 2884964 (-)
G79678 NA non-coding downstream 98697 2800130 ~ 2812494 (-)
G79761 NA non-coding downstream 270636 2640344 ~ 2640555 (-)
G79757 NA non-coding downstream 277464 2633404 ~ 2633727 (-)
G79756 NA non-coding downstream 277815 2633157 ~ 2633376 (-)
G79842 NA non-coding upstream 245993 3162610 ~ 3164376 (-)
G79852 NA non-coding upstream 275628 3192245 ~ 3194984 (-)
G79856 NA non-coding upstream 283870 3200487 ~ 3200710 (-)
G79929 NA non-coding upstream 326286 3242903 ~ 3243398 (-)
G80197 NA non-coding upstream 546849 3463466 ~ 3465034 (-)
G79690 NA other downstream 95799 2813247 ~ 2815392 (-)
G78296 NA other downstream 2884294 26528 ~ 26897 (-)
G80262 NA other upstream 648554 3565171 ~ 3567537 (-)
G80271 NA other upstream 802816 3719433 ~ 3723607 (-)
G80399 NA other upstream 987450 3904067 ~ 3906240 (-)
G80443 NA other upstream 1148325 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 1640251 4560340 ~ 4567647 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012797 ctcf coding NC_007129.7 CM002902.2 22285992 ~ 22295064 (+)
bowfin (Amia calva) AMCG00020364 NA coding CM030127.1 CM030127.1 17261682 ~ 17271532 (+)