RNA id: CI01000013_02912132_02916617.mRNA


Basic Information

Item Value
RNA id CI01000013_02912132_02916617.mRNA
length 3552
RNA type mRNA
GC content 0.48
exon number 12
gene id CI01000013_02912132_02916617
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2911191 ~ 2916617 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTTTATCGCCTGAAAACAGCCGAATCGCCGCAGTCGTCGGTCTCAGTGCGACCGCTCACTCTTATTGAAAAGACTAACCTCAAGCAACAAACGACTGAAGGGATAAAAACTGTAGAGAGCTCCCTCTACAACCCGACTGGTAGTGGTACAAAAACACGATTAACCATCGCAGAATGCCCTCTTGCTGTGGAAAATCATAAGGGTGTTTTAAAACGTGTGAAGGTATTACCCATGGAAGGGGGACCGACTGAGGCAGTGGTGGAAGATGCAGGGGATGCTTTCAAGGCCAAGGAATGTAAGACATACCAAAGGCGACGAGAAGATGAGGAAGTAGGAGCCGAATTGCTGCAGGCTGCTGGGTTAGAGCAAGCCCAGGTTGAAGGAGAGCCTGTGGTGGAGGCCCAGCAACAGTTGGTCGAGAGTGTCGTTAATGTCAACAGCAGTGTGGAGATGATGGTGATGGACTCCCTGGACCCTGCCCTCCTCCAGATGAAGACAGAAGTCATGGAGGCTGCTGTCGGAGCACCTGTTGGTGCTGCCCATGAAGCCACGGTTACAACTGTCGATGACACTCAGATCATCACTCTGCAGGTAGTGAACATGGAGGAGCAGCAGTTGGGCTTGGGAGAGTTGCAGCTAGTGCAGGTGCCTGTTTCTGCTGTGCCCGTCACTGCTGCCACTGTGGAAGAGCTGCAAGGGACACTGGTTGATGCCACTGCCATGCCTAAAGATGGGGAGCCTGTCATCTGTCACACCCTGCCATTGCCTGAGGGCTTCCAGGTGGTCAAGGTGGGTGCAAATGGAGAAGTGGAAACTGTGGAGCAAGATGAGCTCCAGGCCCAAGAGGATCAGCCTCCACAGCAGGAGGAGGAGGAGATGGCTGAAGCCCAAAATGAAGACCCCACGTGGTCTAAAGATCCAGATTACACACCCCCTGTTAAAAAGGTTAAGAAGACTAAGAAAAGCAAGCTGCGCTACAACACGGAGGGCGATAAAGACATGGATGTGTCTGTGTATGACTTTGAGGAGGAGCAGCAGGAGGGACTGCTCTCTGAAGTCAATGCTGAGAAAGTTGTGGGTAATATGAAACCGCCCAAACCAACCAAAATCAAAAAGAAAGGTGTTAAGAAGACATTCCAGTGTGAGCTGTGCAGTTACACCTGCCCGCGCCGTTCCAATCTGGATCGCCACATGAAGAGCCACACGGATGAGAGGCCTCACAAGTGCCATCTTTGTGGACGAGCCTTCAGGACTGTGACATTGCTGAGAAACCATCTCAACACCCACACAGGCACCAGACCACATAAGTGCACTGACTGTGACATGGCCTTCGTCACCAGTGGAGAGCTGGTGCGACACAGACGCTACAAGCACACTCATGAGAAACCATTCAAGTGCTCCATGTGTGACTATGCCAGTGTTGAGGTTAGCAAGCTGAAGCGGCACATTCGCTCCCACACTGGAGAACGTCCGTTCCAGTGCAGTCTGTGCAGCTATGCCAGCAGAGATACCTATAAGCTGAAGAGACATATGAGGACCCACTCAGGAGAGAAGCCCTATGAGTGCTATATCTGTCATGCTCGTTTTACCCAGAGTGGTACCATGAAGATGCACATTCTGCAGAAGCACACAGAAAATGTGGCAAAATTTCACTGCCCCCACTGCGACACAGTTATTGCTCGCAAGAGCGATCTCGGTGTGCACCTCCGTAAGCAGCATTCCTACATTGAGCAGGGCAGGAAGTGTCGTTACTGTGATGCTGTGTTCCATGAGCGCTATGCTCTCATCCAGCATCAGAAGTCCCACAAAAATGAGAAACGCTTCAAGTGTGACCAGTGTGACTATGCGTGCCGTCAGGAGCGTCACATGGTCATGCACAAGCGCACCCATACTGGGGAGAAGCCATACGCCTGCAACCAATGTGAGAAGACTTTCAGGCAGAAACAGCTCCTGGATATGCACTTTCGGCGCTACCATGACCCCAACTTTGTACCCACATCCTTTGTTTGCACCAAGTGCGGAAAGACCTTCACTCGCAGGAATACTATGGCCAGACATGCAGAGAACTGCACTGGTATGGATTCTACTGATGGAGAGAATGGAGCTCCACCTAAAAGGGCTCGTGGTGGCAGAAAGAGGAAGATGCGCTCTAGAAAGGATGATGATGACGATGATAGCGATGAGCATGGAGATCCTGACCTTGATGACATTGATGAAGAGGAAGAGGATGAGCCTCTTGATGATGAGCAGATGGATGTGGAACAGGCTCCACCCAGCGTTCCCATCCCCGCACCAGCTGAACCTCCTGTCAAGAGGAAACGGGGCAGACCCCCCAAGAACGCACCCAAGGCATCTCCTACAAAGTCTATCGCCAAAACCACCACAGCTGCTGCCATTATCCAGGTGGAGGATGAAAGCACAGGGGCCATTGAGAACATCATTGTGAAGAAGGAGCCTGAGGGCTCTGATGCAGTTGTAGCTGCCCAGCCAGTGGTAGAGGAAGTGGAGGCAGTCGAGGCTGGTGTAGAAACAGTGCAGCTAGCTGTCCCTGAAGCTGCACCTAATGGTGATCTTACTCCTGAAATGATCCTTAGCATGATGGACCGGTGATCTGGGGATATGTGTGCGCACACAGGCTGATCACACATGCTTGCATAAATGCACATCCCCATATGTGTCCCCTGAATATATATATATACATATACACACATGCTCACATCCTTTTTTTTTTTTTTTTTTCTTCCCCTCACCTCCTTTAATTCCACGCCAAGTCCTCATGTCCTGCATCAAATCTCTTAAGGACTCCATTGTTCCGCTACCTTTTCCTATAAAACCCTACTTAAATTTTGTCTTCTCATGACGGATCACAAAGCTGCGCTTTTCTACTGTTTCTATCACACCAGTAGTTCAACTGCTGAGTTTTTTTTTTTTTTTTTTTGCTGTGTACTTTGTACGTGGAGAGGCCAGATGAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGAGCAGGAATGTCTCTGACATTACATGGTATAATACATGCATCTAGACTTTTCTTTACCCATCTAACCTTCTGTCTTCATTTGTCATTTTAAATCTGACATTACCATGGCAATATTGAGAAACAATATCATTTTGTGCCTGGTCAAGCCTTGATATCTAGAATCGCTGTCACTGCTGTAGAAAATCCTCTCAATGTTTGACATTAATGATGACTTTTATTCGCTGTTTGTTCCTCATGTGCTCTTTCACTGGTCACAGATGATAATGTTAGAGAGCGTAGAAATGTAGCCGCCTAATTATCAAGCCAGGGACGATGACATCCATCCATATGTTAAAAAAAAAACCTGCGGTTGATAAATTTGTACAAAAAAGGTCATCTTGGCTAGTCTTGCTTGTAAATAATTTTTATTTTCTGTTTTATTATGAACATTTTAATCTTTTTCTAGTGAATTGATGACCTTGAATGCTAGGGCAATGGCTTTTAACAGTAGTTGTTTGGAAACATGCCATTGAAAGCTTTCAAATTACTTGTGGGGCAAAATAAA

Function

GO:

id name namespace
GO:0003682 chromatin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90840 lncRNA downstream 26227 2884672 ~ 2884964 (-) True G79779
TU90735 lncRNA downstream 98697 2800130 ~ 2812494 (-) True G79678
TU90819 lncRNA downstream 270636 2640344 ~ 2640555 (-) True G79761
TU90815 lncRNA downstream 277464 2633404 ~ 2633727 (-) True G79757
TU90814 lncRNA downstream 277815 2633157 ~ 2633376 (-) True G79756
TU90908 lncRNA upstream 245993 3162610 ~ 3164376 (-) True G79842
TU90919 lncRNA upstream 275628 3192245 ~ 3194984 (-) False G79852
TU90929 lncRNA upstream 275628 3192245 ~ 3194815 (-) False G79852
TU90923 lncRNA upstream 275694 3192311 ~ 3194984 (-) False G79852
TU90928 lncRNA upstream 275694 3192311 ~ 3194815 (-) False G79852
CI01000013_02870258_02903686.mRNA mRNA downstream 7505 2870258 ~ 2903686 (-) True CI01000013_02870258_02903686
CI01000013_02834348_02858912.mRNA mRNA downstream 52279 2834254 ~ 2858912 (-) True CI01000013_02834348_02858912
CI01000013_02733870_02751654.mRNA mRNA downstream 159537 2733706 ~ 2751654 (-) True CI01000013_02733870_02751654
CI01000013_02718442_02730091.mRNA mRNA downstream 179602 2718306 ~ 2731589 (-) True CI01000013_02718442_02730091
CI01000013_02606100_02629603.mRNA mRNA downstream 281588 2606100 ~ 2629603 (-) True CI01000013_02606100_02629603
CI01000013_02919679_02944235.mRNA mRNA upstream 2972 2919589 ~ 2944235 (-) True CI01000013_02919679_02944235
CI01000013_02999657_03003223.mRNA mRNA upstream 82656 2999273 ~ 3003580 (-) True CI01000013_02999657_03003223
CI01000013_03051289_03084843.mRNA mRNA upstream 133850 3050467 ~ 3085258 (-) True CI01000013_03051289_03084843
CI01000013_03102811_03111426.mRNA mRNA upstream 185992 3102609 ~ 3111426 (-) True CI01000013_03102811_03111426
CI01000013_03275705_03371030.mRNA mRNA upstream 359088 3275705 ~ 3371030 (-) True CI01000013_03275705_03371030
TU90747 other downstream 95799 2813247 ~ 2815392 (-) True G79690
TU89207 other downstream 2884294 26528 ~ 26897 (-) True G78296
TU91381 other upstream 648554 3565171 ~ 3567537 (-) True G80262
TU91391 other upstream 802816 3719433 ~ 3723607 (-) True G80271
TU91525 other upstream 987450 3904067 ~ 3906240 (-) True G80399
TU91578 other upstream 1148325 4064942 ~ 4066017 (-) True G80443
TU92144 other upstream 1640251 4556868 ~ 4558903 (-) False G80954

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025529 True 6319 mRNA 0.42 12 NC_007129.7 22287188 ~ 22295064 (+)
bowfin (Amia calva) AMCG00020364 True 4047 mRNA 0.49 10 CM030127.1 17261682 ~ 17271532 (+)