CI01000013_02919679_02944235 (FAM65A)


Basic Information

Item Value
gene id CI01000013_02919679_02944235
gene name FAM65A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2919589 ~ 2944235 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_02919679_02944235.mRNA
GAACCTTACTGTGTTCAGCACCCCGGCGTGCGTGAGGAAAACTCCCTCCAGAGCAAGCAGGATGTTCACGCTCTCTACTAAATCACCTCCCCCAAAGGTGCCCCAGCCTGAGAGGCTGGACGAGGTGTACGAGGCCCTAAAGAGAGGACTGCAATCCTACCTGCAGGTCCATCAGATGGAGCTGGACAGTCTGAACAGACAAATGAAGGAGTCTAAGAGGAACTCTCGCTTGGGGTTTTTGTATGAACTTGACAAGCAAGTGAAAGTGATTGAGAGATTTATGAGGCGGCTGGAGTTTCACCTCAGTAAGATTGACGAGCTTTATGAGGCCTACTGCATGCAGCGCAGACTTAGAGACGGAGCCGATAAGATGGTGAAGGCTTACACTGCCTCTCCAGGCAGCAGGGAGGCCAGAGAGAGTCTGTCTGAAGCTAACAAGAGCTTTAAAGAATACACAGAGAATATGTGCATGCTAGAGAGTGAGTTGGAGAACCAGCTGGGGGAATTCCATGTCAAAATGAAGGGCTTGGCGGGTTTTGCACGACTTTGTGCTGGAGATCAGTATGAGAGCTTCAGAGTGACTGACAGGCCAATCAATGCAGTGAGTCAGCACAGTCTGCTCAGCAAGAGCCCTCAGAGATGTGACAGTAAGGGAGGTGGTGTGAAAAAGAAAAAGAAATTGACTCAAGAAGATCTAGAAATGGATGAAAGAATCTTTATGAAGTACGGTCGCCAGCGGTGGAAGCTGCGGGGTCGGATTGAAATCAATGGCAAGCAAGTGTGGGACAGTGAGGAGATGGTCTTCCTCCCCCTTATCACAGAGTTTCTGTCTATAAAGGTAACGGAGCTGAAGAGTCTGGCCAATCATGTGGTGGTGGGAAGTGTCTCGTGTGAGACGAAGGACCTGTTTGCTGCCCTGCCCCAAACAGTAGCTGTGGATATCAATGACTTGGGCACCATCAAACTCAGTCTAGAGGTCACCTGGAATCCATTTGACAAAGATGACCAGTCGTCTTCAGCTAGCACCGTGAACAAAGCTCCTACTGTCAACAAACGCTTCTCTACCTACAACCAGAGTCCTCCAGACACACCCTCTCTACGAGAGCAGGCCTTCTATACAGCCCCACGGAGCATGATATCCAAACAGCGCTGGTCCTTACTGGACGTGTTCAGAGACACACTGACAGAGAAACTGACTCAGAGCTGCTCTTGCAGCGACGTCACCTCGGTCCGCCTGGGAACCTCTCTGCTTTCCAGCCATCGCATATGTCTCACTATCGACCATATAGTAGAATATGAAATGATGGCCTTTCACATGACTCCATCAGGGCTTCAACACAAGCATATAGGGTATTTTTTATTATTTTACCACGAGTTTGATGCTTTGCAGAACATTAACAATATGTTGAGGAGACAAGAAGAGATGGAAAACGGAACAGCATGGTCAAACTCCTCCGAATCCTCAGATGATTCCTCCAGTCCTCAGCTTTCCTTGGGAATGCGTCACGCACACAAGAACTTAGTACAGCCTGAGGTACAAACTGCTCCTCCTGCCATTGAAATCGCATTTGCACCCCGCGAATCGGCAACCTCTACTCCCACCCGCCTGGCCAATCAAAAAGAAGAGGAGGAGGAAGAAGAGGAGGATCTGAAGAAACCAGCAACAGTCACCACCGAGGCTCCTGTAAAACAGGAAGTGCCCAATGGCCATCCCCGCTATTCTCGCTCCCTTAGCCATATCAGCGAGATCAGCGCAGATGGTGTTTTGACAGACAGACTGGCTGGGGAATCCGTGGAGGCCACTGAAGTAACTTCGGCGGTCTCTTCGGTATTTGTAAGTGACATTGCCATGGATATGCCCCACCGAGCAGAACTATGTTTTGTAGTACCAGACACTCAGGAGATCTGTCCCATTCCTGATCCCTCCAAAAGTGAGCCATCCTGTCCCACTGAGCCACTGAACTGTAAAGTAGAAAGTAGCTCTCCTGCAGAAACCACAGCTTGTGACTCAGCTGAAAAAGCTACAGAGCTGACGTCTAGGCCCTCCTGTGGAGACAAAGACTCTTCCTCCAGTGCTAATACTTTGTCCCAGCAGATGAACAATGGTGCTCCTAGGACTGATTCCTCTTATGAGCCACACCTCACAAAGACACAAACGGATGACCTGCTGGCAGAGAAGTCTGGTTCTTTAGTAGACACCAGACCCATGGGTGGTTTGGAGGAACAATCAGCAGACGGCAATGTGGAGGAAGCCCTTGGTGCCGTTTTGTCCTCCCTTGATGACTACAGAGGCCAGTTCCCAGAACTGCAGGTCTTAGAGCAAGAGCTAAAGCTGTTGGAGGAGGCGCTAACAAATTGGCCTTATGAATGTTCCAGCGCAGAGGAGCGGCCAGCGGCTGTGGAGAGCGCAGGAGAGGATGAGGGCTGTGAGGCGCGATGTTGGGACACTCCCTCCGGACCTCTCAGCACAGGCTGCCCGGCTCTAGATCACACCCTGCTGGTCCATCTGAAGAACTGCAGCTCACAGCTGCTGAGGTTAGGCACATTCGGGCCTCTGCGCTGTGGGGAGATGTACGCCCTGGACCGACTTCTCAGGGAGGCGAGAGTCCTCGAGCTCATACGATGGGTTGTGAAGGACTCAAGGGGCGGAGTCATCCAACCAGAGGAGATTGTTCCTCAGTTAGATCAGTGCCAAGGGGCTGTGTTGCTATGGCGGCAGTGCACGGATGGCTGCAGTGTGTACAGCAGCTCCACAGAGGCCTTCTTACAGGCGCTCAGCGACGCTTATGCCAGTAGACTCCCAGAAAGAGGAGTCGGCTTCACAGATACAGTGTTTCTGCGTCTGCTGGAGCGGATCCTGGAGAGGAAGCTGCCCAGGCGTGCAGGAGGTGCGTCCAAAGAGACTCTCACCCTCTTCCAGTTTTGGAGCTACCTGGAAGCAGAGGGGGTGAATGACTTGGACACACACATTCCTGAGTTGGCTGAAGAAGTGTGGCTAGTTCAATGCCTGCAGTCTGGAGATCAGGATGTTCTGGTAAAATCTTTGAAGAAGCCTCCAGAGTGTAGTCTGAAGAGGGAGGGCTTGCGGGCAGTCAGTCTGCTGCTGAGGGATCCGAGGGGGAAAGTGTGCAGTGCAGCCAGCTCCCTGCTGCGAAGTCTAGCTGACCAAACCCGCCACAGGGAGAGGGCACTGGTGAGCTGTCTAGAGTTGCTGGAGGATGAAGGCGTTGAGACGCGAGTGTGTGGATGTAAAGCACTCGCATGTCTGAAGGCCAAAGAGAGCATTGAGCAGTTGGTGTATCTGTGCCGGACAGATAAGGAGGATGTGAGGGATGCTGCCAAACAAGCTCTGCTTGTGCTAGGTGAGGAGGGGAAGATGGCCCATCGACACCTTGAGTCCTCACAAGATGGAATGTCCCGCCTTTTTGCACCCGGCAGTATGGCCAGTACGGCTTTCTAACACAATCAACTGGCCGATACTTGTCAAAAACAATGTACTTGTGTCTCAGTATCCTCACCGTCCTGATCATGCCAATTGCAAACTATTAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_02919679_02944235.mRNA True 3550 mRNA 0.52 24 2919589 2944235

Neighbor

gene id symbol gene type direction distance location
CI01000013_02912132_02916617 CTCF coding downstream 2972 2911191 ~ 2916617 (-)
CI01000013_02870258_02903686 CARMIL2, RLTPR coding downstream 15903 2870258 ~ 2903686 (-)
CI01000013_02834348_02858912 CFDP1 coding downstream 60677 2834254 ~ 2858912 (-)
CI01000013_02733870_02751654 NA coding downstream 167935 2733706 ~ 2751654 (-)
CI01000013_02718442_02730091 BCAR1 coding downstream 188000 2718306 ~ 2731589 (-)
CI01000013_02999657_03003223 NA coding upstream 55038 2999273 ~ 3003580 (-)
CI01000013_03051289_03084843 RANBP10 coding upstream 106232 3050467 ~ 3085258 (-)
CI01000013_03102811_03111426 DNAH6 coding upstream 158374 3102609 ~ 3111426 (-)
CI01000013_03275705_03371030 NECAB2 coding upstream 331470 3275705 ~ 3371030 (-)
CI01000013_03375650_03387110 HYDIN coding upstream 431173 3375408 ~ 3387163 (-)
G79779 NA non-coding downstream 34625 2884672 ~ 2884964 (-)
G79678 NA non-coding downstream 107095 2800130 ~ 2812494 (-)
G79761 NA non-coding downstream 279034 2640344 ~ 2640555 (-)
G79757 NA non-coding downstream 285862 2633404 ~ 2633727 (-)
G79756 NA non-coding downstream 286213 2633157 ~ 2633376 (-)
G79842 NA non-coding upstream 218375 3162610 ~ 3164376 (-)
G79852 NA non-coding upstream 248010 3192245 ~ 3194984 (-)
G79856 NA non-coding upstream 256252 3200487 ~ 3200710 (-)
G79929 NA non-coding upstream 298668 3242903 ~ 3243398 (-)
G80197 NA non-coding upstream 519231 3463466 ~ 3465034 (-)
G79690 NA other downstream 104197 2813247 ~ 2815392 (-)
G78296 NA other downstream 2892692 26528 ~ 26897 (-)
G80262 NA other upstream 620936 3565171 ~ 3567537 (-)
G80271 NA other upstream 775198 3719433 ~ 3723607 (-)
G80399 NA other upstream 959832 3904067 ~ 3906240 (-)
G80443 NA other upstream 1120707 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 1612633 4560340 ~ 4567647 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location