CI01000013_03375650_03387110 (HYDIN)


Basic Information

Item Value
gene id CI01000013_03375650_03387110
gene name HYDIN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3375408 ~ 3387163 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03375650_03387110.mRNA
ATTTTTGATCCTTTTCAGAGGCACAGCTAGCTCATGTAGCCTCTCTGAACCTCATGGCTGGGCAACAAGCAGAATTCCAAGTCGGGTTTCATCCAAAGGTGGCTCAGAAGTTTGAGGCCTGCATGAAGTTAATGGTAAGGGATAACCAGTATGATCAGACAGAGGTGCAGCTTGTGGGCGAGGGTTACCATGACATCATCATCCTGGAGAATATTGGCAGCAAGGCTCAGCAGGACAGTAGTGAAAGTCCATCTGACCTTCTGGATTTCAGAGATTGTCATGTGGGCCGCACTTATCAAGAAACTTTCACCATGACAAACCCAAGCAGCTCCAAGGTGCTCCGATTTGAATGGCTTCCCAATGACCCACAGCTGAGTTTTTCTCCACAAGTTGGCCACCTGCATGCCGAGTGCTCCAAAGTTGTGACTGTGACCTTCTGCTCAGAGCAGCCAATAGTGCTGAATGCACAAACAATAAAATGTAAACTCAGCAGTATTACCTTTCATCAGCCTGTAGATCAGGTCCCAGACTGGGATGATTGTCACAGGACTGTTAAATGGGTGGATGCAGACAAGTCGTCACAACAGCCAAACAAACGGAAGGTTGTGGCGACAGACCCTGAGCCTCCTCACTCTGTGGTGGAGAACTCCTCAAGAGAGATGGAGCTCATGGTTAGTGCCACTTGTGATTATGTCAAATATCAGTGTGATACTGGACCCATCCGCTTCAAAGACACAATGCTGTACCAGACCAGAGTCTTTCAGCTCCAGATGGAGAACAAAGGGAGTATTAAGCTGGAGTATTCCTGGCAGGTTCTAATGGAGACGTATGGAAAGACGACATGCTTTGAAAATAGAGGTAGGACTTCTCGCTCGGCTCAAGGCAGTAGGACACCAGAGAGACCAGCAAGCTCTCTGCAGAGTGTGTCTTCTCTACTGCTAGGAGACCCAGAGCTTCCTCCCTTCAGTGTTGATCCTGGAATTGGGTTTATCAGCCCAGGAGCGAGTCAAACCTTCCACATTCGATTCTCCCCTCTGGAAGTAGCTGAGTTTGAGGCCAGTTTGATCTGCAGCATCCCTAATCTAAAGGACGAGCAGAGTCCAGTAATCGCTGTAAGTGGGCGCAGTTTGCTGCCATACTGTCATTTCCACCTTAAGGATTCAGACTACCTCACTGGAAACAGGCGGAACCCTGACCCCCACAGCTCGCTCACTGTGGACCCCAATACCAGGGTAATAGAGTTCACCTCAGTGGGTATTGGCACTTCTGTCTGCAGGGAATTTGGTATTATTAATCCCACGAACAAGCTATACTCTTTCATCTGGAGATGCGACGACTCAGGCAAATCTCCTTTCAACTGCCTTACACCAAACATGTCCATTCAGCCGGGGAAGGAAGTGAAGGCCTCATTTGAGTACCAGGTTCTCAACCTGGATTTAGTGGAATCCTTCTGGACCTTCTTAATTCCTGAACACAACTTGTCTTTGCCCTTTCTGCTGGTGGGCACCGCTAATGAGCCTATAGTCTATATTGATCGAGCCCATCTCAATCTGGGCAGCTTGCTACTAGGTTTTGAAGCTCATCAGACTGTTTTTGTGGTGAATGGAGAAGATCAACCATTCCATTTTATGGTCCAAGAATCCTCCTGCCACTCTGAGGGCTACCAGGACAGCTTAGTGGTAGAGCCAATGGAGGGAACAATTCCACCCAAAGATAAGATCCCGATGGTCATACGGATCACTCCCACTCGTGAGGGACATGTGGCTTTTAATCTAGTAGTGACAGTGCAGAGGAAGCTCCAGCCGCTGACCATGAACGTAAAGGGAGAATGTTACAGCATGAATGCTCATGTGCGATATGAGAGCCCTGAGGGATCAATCACAGAGCTCTCTTCACACCAGATCCATCCGGTGGACTTCAAACAGGTGGAGTTAAACGATAAATCCACATGTACGTTTGTGGTGTCCAATCCTGGGAAGTTCAGTTTAGATGTTGAGTATGATCTATCTGGGCCAGCAACACTGCAGCCCCACCTGCAAGTGGAACCTAAATTGGACACGGTGGCTGTAGGTGGACAGAGTTCCTGCATCGTGACCTTCTGCCCTCAGCGGAAATGTGTGCTCAAAGATCTGACTTTTTCCATTAAGATAAAGAATGGACCGACATTCCGTTGCGCCCTGATGGGTTCAGCTATGACTCCAGACCTGGAATTTTCTTTCCTCAAGCACAACTTTGGAAAGCATTTCTTATACTGTGTTGGTATGGTGCCTGCTACACACACACTGGTGATTAGCAACAGAAGCAGCAGAGGAATCAGTCTAGACTGTTTGTTCTCCAACACACCCAACCTGGAGGTCACCTTCACCCCTCAAGTCCTTCCTCCTGGTGGCTCTGTAGAAGTTCTCTTCTCATTCTATCCACGCAAAGCAGTTCGTTACCACGAGAAGGTGGTTTTTGAGATGAATAATTGTGCCAAACAAGTGGTGGAGATCCTGGGACAGGGCATTGAAATGAAGATTAATTTAGAAGACTCAGCACATAAAGTGGTCAATTTTGGAGCTCTGCAGATTGGGCAGCGAAGTCAGAAATTGGTCCCTCTGGTGAACAACAGCCACTCTTCCCTGACTTTTTGTCTTCGCCGCCACTCTGATAACTCTCTCCAGGACTCAAGGATCTTGTCAGTTCGTCCAGAGGGGGAGGTGACACTTAAAGAGGGGGGTGGCCGCTGTGTGGTGGAGCTTCTCTTTTCTCCTGAACAGCGCACACCTCCCTTCACAGAGGAGCTGCAGCTGGAGTGTTTAGGTGCTGTTCGCCCCCTGCTGGTCATGAAGGGCTGCTGCCAGGGGGTGGAGGTCAGACTGGACACAGACTACCTGCAGTTTGGAGCTGTGGTCCAGCGCTGCCAAGCCACCCGTCGTATTATCATGCAGAACACAGGAGACATTGGTGCGAGATTCAAGTGGGATGTAAAGAGTTTTGCTCCAGATTTCATCATTTTTCCTGCTGAGGGCTACATCACCCCAGGGATGGAAGTATCTCTTGAAGTGACCTTTACCCCTACGGAGCTGAGTCAAGATTTGCGCTATGATGATCTCTTCTGTACTGTAGAGGGGGGGAAATCGTTAAAACTCACACTCACTGGCTCCTGCATTGTCCCGCAGGTTGCAACAGAGGTGGTGAATTTCGTATGTCAGGTGCGCAGTCAGTGTACTCAGTCTCTGGTTCTGCCCAGCCGCATTAACCAGCGCTGGACTCTGAAATGTGTCATAGAGGGAGAGCACTGGAGTGGGCTGCCCACTCTCCTCATTGAGCCTTCACAGCAGAACACCTATGATATCACATACAAGCCACTGGTCATGACTGCAGACGGGGAGAGGCATGAGGGCTCTGTGTTCTTCTCCTTTCCTGATGGCAGTGGAATACTGTACATATTGCAAGGCACAGCTGAGCCACCAAAGGCTGAAGGCACAATAACTGAAGAGATCAAATGCAAAACCCACCACACACAGACAGTACCTGTCCACAACTGGCTGCCCAGACCTCAGAGGTTCCGTGCTGTGATGGAGCTCATCAAACCAGATCGTTCAGACGGCATCGTTTCCCTGAAGGGCCTGGAATACATTGATGTGACATTCAAGAATGAGGCAACAGGCGAGTTCCTATTCTACAATCTCAACTTTAAAACGACAGCTCCGGGACTGATTGACACTATAGAAATGGCGACCCGGGTGAGGCAGATAACATCAGGATTCGTGGAGGTGGAGAACCCTCTTCTTGTGGATGTGTCATTCTCTGCAGAGTGCCAGAATTCAGACATCAGTTTTCCGCCACAGTTTCTTGTGCCTGCTCAGTCTAAGGGGGAGTCCGCAGCCCGGCTGGTGTTGTACGCGGCTGAACTCGGACACTTCTTTTATGAGCTTCAACTGAAGTCTCTGCCTGCACCCCTTGAGAAGCCTTTATATTTCAGAGCACCACTTGGCAGCAAACACAGTGTCACAGCTAAGTTCACCAACTTCTCCCGTGTCAAGACTGAATATATTTGCAAGACGGACAACCCGAACTTCACTGTGGAAAAGAACATTAAAGTAGCAGCGGGGAACCAAACTGGCACAGATGTCAGTGTGGTGGTCCATTTTGAACCTTGCCAGGTGGGAGACATCCAAAGCAAACTCACCATCTCCTCAGACTTTGGAGGGGAGTATGTCTTCCCTCTGTATGGCACCTGCACCCCACCTAAACCTCAGGGTCCCCTCATCATCAGCTTAGGTTCCAGTGTCTCTATTTCCTTTAAGAATGTCTTTCAACAGACCACCACCTTCTCCTTTCAGGTAGACAACCCTGCCTTCACTGTCAAGGGCGCAGAGACAATTTCACCTCAAAAAACTCAGCACATACAGGTTACATTTGATGGCCCTCCTACGGGCTCCAGAGGCCCATGTCACGGAAAGCTGACAATATCTTGCCCACGTATAGAGGGCCATGGACAGGGCATCTTCTGGGTTTATTACTTGAAAGGTTACTGCCCAGAGCTTCCTTCAGAGAAAAAAACATCATGAAGAAAAAGGCATGCTATTCTTTGCATAAAATGATTCATGGTAGTGGTTAAAAATTGATTGAATATTGAATATTGCTTTTTGAAAAATACAGTAAGTTTCTTGGGCAGTTCAGTTCTTAATTTGTTCTTTTCACATAAAGATTATTTTATTTATTTTAGTGCATCTTTCGGTTTGAAGGAATATGCTGTTTTAAACAAAACACAAATTTATTGTAAAGACTCAAAATGAACAGAAAAAATAAA

Function

symbol description
hydin Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 5. Orthologous to human HYDIN (HYDIN axonemal central pair apparatus protein).

GO:

id name namespace
GO:0003341 cilium movement biological_process

KEGG:

id description
K17570 HYDIN; hydrocephalus-inducing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03375650_03387110.mRNA True 4798 mRNA 0.48 22 3375408 3387163

Neighbor

gene id symbol gene type direction distance location
CI01000013_03275705_03371030 NECAB2 coding downstream 4378 3275705 ~ 3371030 (-)
CI01000013_03102811_03111426 DNAH6 coding downstream 263982 3102609 ~ 3111426 (-)
CI01000013_03051289_03084843 RANBP10 coding downstream 290150 3050467 ~ 3085258 (-)
CI01000013_02999657_03003223 NA coding downstream 371828 2999273 ~ 3003580 (-)
CI01000013_02919679_02944235 FAM65A coding downstream 431173 2919589 ~ 2944235 (-)
CI01000013_03387692_03454629 HYDIN coding upstream 529 3387692 ~ 3454629 (-)
CI01000013_03538324_03552770 CHKA coding upstream 151161 3538324 ~ 3552770 (-)
CI01000013_03555460_03561041 KMT5B, SUV420H1 coding upstream 168216 3555379 ~ 3561593 (-)
CI01000013_03585420_03587386 ARPIN coding upstream 198089 3585252 ~ 3587386 (-)
CI01000013_03588879_03592043 NA coding upstream 201604 3588767 ~ 3592043 (-)
G79929 NA non-coding downstream 132010 3242903 ~ 3243398 (-)
G79856 NA non-coding downstream 174698 3200487 ~ 3200710 (-)
G79852 NA non-coding downstream 180424 3192245 ~ 3194984 (-)
G79842 NA non-coding downstream 211032 3162610 ~ 3164376 (-)
G79779 NA non-coding downstream 490444 2884672 ~ 2884964 (-)
G80197 NA non-coding upstream 76303 3463466 ~ 3465034 (-)
G80243 NA non-coding upstream 88417 3475580 ~ 3475820 (-)
G80191 NA non-coding upstream 89902 3477065 ~ 3489355 (-)
G80210 NA non-coding upstream 115346 3502509 ~ 3502984 (-)
G80212 NA non-coding upstream 116691 3503854 ~ 3504284 (-)
G79690 NA other downstream 560016 2813247 ~ 2815392 (-)
G78296 NA other downstream 3348511 26528 ~ 26897 (-)
G80262 NA other upstream 178008 3565171 ~ 3567537 (-)
G80271 NA other upstream 332270 3719433 ~ 3723607 (-)
G80399 NA other upstream 516904 3904067 ~ 3906240 (-)
G80443 NA other upstream 677779 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 1169705 4560340 ~ 4567647 (-)

Expression


Co-expression Network