CI01000013_03387692_03454629 (HYDIN)


Basic Information

Item Value
gene id CI01000013_03387692_03454629
gene name HYDIN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3387692 ~ 3454629 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03387692_03454629.mRNA
ATGCCAGCCTCATCTCACTCAAACCTCCGCAGTTCACGCGAGAAGATGCCGGAGGGATTCAAAACAAAAGTAGTGGCACCCCGAAATCCCAAGGTGGTAAAACGTGAGACGAATTCCGCAAAGCTGATTCCATCTGTATATGCTCGAGAAATGTGCCAGACTACAGAAGAGCGATTATTAAACACTTATGAGGTGCATCCGCCCCGCATCCTGGAACTCTTAGACATGAGCGAGGCCACACATCACAAGTTTTCCTCATTAGATTTGGACCAGGCCATGTTTCAGCCATACCCGTCTGAGATTGTCTTCCAAAACTACTCACCATTTAAGACTTACAAGGTGCCCTTAGAGCTGCGGAACAGTGACAAGGTTCCTCGACTGGTAAAGGTGATCGAAGAAGACTCGTTTTATTTTAAAGTGGTCAGCCCATTAGATGCTAGTAAGAAAGTGGCCCCAGGCATGGCATCTACATTCACCATTTTATTCACTCCACAAGAGAACAAGGATTACATTCACAGTCTCATCTGTGTGACTGAACGTGAGAAGTTTGAGGTACCCATTCGTGCAATTGGGCCCCGTGCCATCTTGGACTTCCCAGATAGTCTGCATTTCCAAGTTTGTCCAGTCAAGTGTTTGTCCCAGAGAACTCTGCTTGTGCGGAACATAGGAAATTGTGAAGCTAAATTCCAGCTCAGCACATGCAGCCCATTTTCTGTAGAGCCATCTGTGGGGACTCTTGATGTTGGTCAAAGCATGCAAGTTACTGTTGAGTTCTTGCCTAAAACCACAGGGGATCACAGCCAGGTTTTGCTGCTGCACTACCATTCAGGAGAAGACATCCAAATCAGCCTCTATGGAGATTCCACGGATATAAATGTAGGATTGGACAAGAACTATGTGATGCTGGAGAAAACCTACATCTCTTTGGCTACCTACCAGAAAGTAGCAATAAGGAACAGGAGTGATTCCATCGTGCATTACCAGTGGAAGAACTTTGCTACTGAGGATGAAGAGGAACAGGACAAATTAAGGCTTTCTTCAGATCTGCATCAAGAAGTGGATGATAAGATGGAGCAGTTTCTGACAGAAAACACTGATCCTTCTTTGCGAGCTTGTCTTTCGCTGTTTTCCCATACCCTCCAGGAGGGACTCGTGCAAACTCAGCAGCAGCTTTTGTCTCTGGATGACCAGGACATCATCATGAGACCCCTGAAGGGAGAAATCTGGCCCAACAGCACTGCAGAGGTGATCATCATCTTCAAACCGCAGGAAGCCAGGAACTACCAGCAGACTGTTTACTGTGAAATCACTGGTCGTGAAACTCGGTTGCCACTCTGCATGCAGGGAGAGGGTGTAGGCCCAAAACTGCAGTTCAGCTTTGACTTTCTAGACATGGGAAACATTGTCATTGGCTCCAAACAAAGCTATAAGCTGCTTCTGAGCAACAAGGGACTGATAAAGGGTGCGTATAAACTAGTGCAACCCAATACAGTGCTGGGGCTTTGCTTTTCCTTCAACCCCTCTGAAGGCATGATCCTACCTGGAGCCTCCCAGACACTGGAGGTCCACTTCTCTTCTGACAAACTGGGTGTCTTCTCTGAAGAGTTACACTTCAGTGTGGTGGGAAACCCTGAGCCTGTCATTGTCACATTTAGGGGGTGTTTAATTGGGCCTACATTCCACTTCAGTGTCCCAGAGCTCAACTTTGGGGAGGTGTCCTTTGGTTTTCCGCAAATGCTGACATGTCGCCTTAGCAACACTTCAGTGGTGCCCATGAGCTTTGGACTGCGGATCCCCGGAGATGGCACGGGACAGGCGAGCAGTACCAGCACAGACCAGGTCGCTCAGCTAAACAGAAATGAATGGGGACTGGGAGACAAAACTGAAAGAAGACCGAAAGAGTTTATCTTATCACCCAGCACCGGCACCGTTCGTGCTATGGCTGAAATAGATATCCAGTTAACCTTTTGCTCCAACACGGTGCAAGACTACAATCTGTCTTTAGTGCTGGATGTTCAAAGTGTTGGAGAGGAGGTTTTAGCTCTCCCAATCAAAGCTAGATGTGTTGTGCCGGATGTGGTCCTCAAGAACCCAGTTCTTCAGTTCCAGCACTGTTTCCTGGGTCATTCCTATGAGCAATCAGTTGAGCTCATTAATGATACTGACCTCCCTGCGTGCTATGGATTTCTGCCTCAGCCTTATGAGGAAGACCCTTCTCTTCTTTATTCCAGTCCTCATGCACGAGGAATCATCCAGCCATACAGCACAGAACAGATTCCATTAGTTCTTCAGGCCAAGACAGTGGGCAGCCTACAGGAAACAGCTCACATTGCTATATTTGGACGTCAAGACCCACCTTTGGAGCTCCTCCTGTCCTGTGTTGGCCAGGGACCTTCTGTCTCTGTCACTGCTGCCAAGCTGAACTTTGGCTGCATTCCCGTGCTGACTGATGTCACAAGGACTTTGCAGCTGTCAAACGACTCCCCAATCCCAGCCAGATTCCTTGCTCAAATGGTGAAGAACAGGTCTCACTGGCGTGTGGATCCCAATGAAGGGGAAATTCCTCCAAAGGAGAGTCTGGAATTGAAGTTGATAGCCCATCTGAATGACACCGTACCCTTCCAGGATGAACTGTTGCTGGAAATCCAGGACAGCCAATATTTTAACATTCCTGTGTTGGCCAAAGGAAAGGGCACCACCATAGTCACTGACCGCCCTTTTGCTCCTAGCCTGGATTTGGGAACCCACTTCAGTTCCGGCCCATGTCAGTATGTCTTCAAAATTACTAATCGAGGACGTCGCACTCACCAACTATTATGGACCACAGAGGGGTTTCCACAGTTTAACAAAAGAGACATTCTGTCACCTAACAAGTCTAGGAACAAAAAAAGAAAGAGTTTACAAACTTCAGATCAAGAGGGCCCTGTCTTCAGCTTATCCCCTGCACGTTTATCACTTCCTCCTGGCCACTCAGCTGACATGCTGCTAGAGGGCTCCTCTGACGTCCCCAAGGTGGTTACGGAAAAACTGGTATGCTATGCTGTTGTCGGGCGTCAGTATGTGAGAGAGTGCATCATTACTACAGATGTCACATGCCAATTTGTCTCCCCAGCAGTAGACATTTCCTCCCAACAAATCAACTTCTATGTGGAAAAGGCTCCAGATGTGTCTCTGGTTCCGCTGTATCAAAGGCTGGTTCTGAAGAGTGTGTCCTCCTTGAACCTCTCTATGGAACTGACCCTGCGTGAGCCTTTTGGATTGTGTGATTATGATGGGGATGAACTGTTTACAACCTCAAAGAGACTGGTGCTGGCGGTCGGAGCTCAGAAAGAGTTGTGGGTGCGTTTCAACCCCATGTATCAGCACGATCGCCTCACCCGTGTGGTTGAGGACGTGCTGGAGTTCTGCTACCATGGCCACCCTCAGCAGGACCGGGTAGTGCTAAGGGGTGAGGTTCACTTCCCTAATCTCAAATTCTCCAGCACCACATTGGACTTTGGCTGCATTCTCAACAACACAAAATCCCGCCGCAAGCTCACCATGACCAACTGCAGCCCACTCTGTGTTTCCTACCGTTGGGCCTTCCTGGTAGACCGACAGCAATGCCATATTGGGTTTTTTAACGAGACGAGCCGGGGGAATGAAGGAGACGCTGGGGGGAAAAGAAAGGAGAGCAGGGAGGCGCAGTGGGAGCTGTTAGAGCAGAGAGAAGCTGACGGGAAGAAGGACCCAAACAGGGAGACTGATGTAATCATGCCTCAATTGGAAGAGAATGAATTGCATCATGGTAGTTTCTATGGACAAGAGCAGAATAGGACCTGCTCAACATGGCCAGTGAGCACAGAGCTGGGAAGCAGTCCCATCAATCTCACAGCCAATGAGCATCCAAGTGTGAGTGTGAAAGAGGTGTTTGATATCTCCTCACTGTATGGGGAACTACAGCCTGGTGACACCAAGCTGGTGACCTTCTCATTTCTTGGTCACGCAGACATTAGCACTCATGTGTTGGCATTGTGTGAGGTGGAAGGAGGGCCCACCTATGAGATCACACTCAAGGGTCAGGCTTCTTTTGTTTCGTATACAATGGACACAAATGACATTGACTTTGGTTTACAGTTGTTTGACCATGTGGCCGAAGCAGAGCTCATTCTGAAGAACACAGGAAAAGTTGGATTTGATTTCTCTTCTCTAACTGGAGAACCAGGACTCTTTCTGGAGCAACTGTTACCTGGTCAGCCTCTCATCATCCCCAGCCAGGGTCACCTAGAGCCGTATGCAGAAATCAGGCTCAGTGTATACTACCTTCCAGGGATCCCAGAAGTCTTTCACAAGACCTTTCAGTTGCAAGTGGCCTTTTATGAGACTGAAGTCATTACTGTAAGAGGAGAGGGTATTTTCCCTCGACTGTGCCTGGACCTGCCTAGAGACCTGAATGAGGAGATATATGGTTCTTTGCTGAAGGAGGCAAAAGACTCGGTGGAGAATGAGAAATCAAGGGAGGGGGTGTTGAGCAGGCCTGTCACAGTAAAGGAGGAGATGCCACCTGAAGACGACTACATTCCCACTTATGATGCCCTGCTGCAGATGGAGTTAGAACGGCTCCTTGTGAAGGAAAATGCCATGGCTGTACAGAACCAGCACCAAGACACTGATCTAAGAGCAACTGGATCCACTAACAATTGGCTCAAGAAGCTGTGCAAGTTAATCTTGCCTGAGTACACACTGGACTTTGGGTATGTCATCAATGGCAGCATCGTGACCCACATTGTCAAAATAACCAACACTTGTCCAGTGGCTGTATCTTTCAGAGCTGACAAGAGCTCACTGGCAGGCACAGGGTTTAGTACAGAATTGGACAGGGTGCAGAATTTGCCCTTCTGTGAGACAGAGACGTTTGAAGTGAAGTTTGATACCCGTGGGGCCAGTCTGGGAAAGATCAATGCGGTTATGCCCATACAGGTGACTAAGGGACCCCAAGTCCATGTGCGTTTATGTGCTGAGGTCACCATGCCCTCCCTCACAGTGTCAACAGACACACTGCAGTTTGACACCATCGAGTGTGGCCTGTGTCAGGTGATCACTGTCCAGCTGTACAATGATGGGCCAGTGCCCTGTGAGTGGAGCATCAAACAGGAGGAACGGCCAAAGAAGATTGACAAGCACATCCCACTGTACCTCAGACGACAGGCACAGCTGAAACAGCGGCCTCCTCCAGTTGTCTTTGAGTTATTGCCCTCAGATGGCACACTCTATCCTGGTGACAGAATCAACATGCAGGTCAAATTCAGCCCAGCAGAGGGGAGGGTGTACAGTCAGAGGCTAGTAATAACAGTGGCTCAGAGCACTCAGAAGATCCTGCTGCTCGCCCAAGGTCAAGGAGAAGTGCCTCGGCTGGAGTTTTCCTCCTCAAAACTAGATATGGGGTCCATCCTACCCTATAGTGAAGGAAAGGTGGCTGAGGTGATTGTCCGCAACCCTTGCCCCTTCCCTATTGAGTTTTACTCTCTGGACTTCGACAAGCAGTACCTAGAAGAGGAAGAGATCTTGCGGATGTTAAAAGGATATGATGCTCAAAATGTGTTACTTCTACCTCCCCGTGCTCCTGGCGAGACTCTGCCCCCAGAACTGTTGGACTACTACAAAGAGCACAGCTCACAAACCAATCAGGAATCCGCGGAAGGTCTTGCAGAAGAAGACAAGGGGGAGACAGCTGAACCATGTGAGGGTGAAACACTCAGTGGTAAAGGCCTGACTAAAGACAACATCAGTGCTGGCACTGCAGTGGGGGATCTGGAATACGACCCTGTGTCCAGAGCTATCGCACGTCACATGGGCATTGATCTTTCACCAGAGGGCAAGGCTGCCCTAAATCGCCGGGGCATTGCCATTATTGTGCATGGCGCTCCTCTGTCAGGTAAAACAAGCACAGCAGTTACTCTGGCTAAGCACTATGGGGCGGCGTGTCTCAGTGTAGATGAGGTGGTGCAGGAGGCCTTGTCATCAGGGAGCAGCTCTGCAGCTCTGAGGGCAAGAGAACTATGTGCCAGGGCTGTTGTGGTGTATGCTCAGAAGGAAGTGGAGGAGTCATCGACAGATATGATGGCAACTTCTGGTCAGGGTGCTGGTGTTCTTAGTGTCGAAGCAGTTGCCAAACACACGGCAGAGGGCAGCCAGACCAGTGATCCTAAAGTCCCGCCGTCATCTGCCTCAACCCGCAACAAAACAAATGTCACAGGACATTCACAGAAGAATGGCAGCTCTGGACCTGCTGCTTCAGTGACAGATGGTCAGGCACACATGCGTCTGAGTGTCAGTCAGAATGAAGAGCTGGAGCTGAATAGCTGCCTCCTGCCTGATGATGTGTTGGTAGAAATCCTGTCAGAGAGATTGCAGCTTAGCGACTGTCACCGTGGTGTTGTGATTGACGGATTGGAGACACTGTACAGCCGCACTCTAAGTAACACACTCCAGATCATCCTGAAAGCATTCAACAACCGTCGCCATATTTATGTTATCGACCTCTTTAACAGCTACACTGCCTTCAAGCTCAGAGAATCGGACAAGTTTGACGAAGAACAAGAAGCGAGAAGACAACAAGAGCTTGAGAATTTAAGAGCAGATGAGATGACACCTAGTGAAGACTGTGATACCAGACCACGAGAGGAAGACCCTCTGCCACTTTCTGAGGACCTACAACAAGAGATGTCCAGTGAGAGAGACAGACAGCTACTGGCCCGATTCCATCTGTACGAGCAGAGCCAGACAGAACTCCAACACATTATTCAGTTCTGGGACCGAATACAGAGTCTTTTATTACAGCCCATGGCCTCCGAAGGTCAAGAGACCAGAGACACCATGGACTATATGAAGTCACCAGCTCCTAGTCAGACCCAAGTGTCAACTGATGGTGCCGAAGACTCAGAAAAGATGCTGATGCTTGAACCCATCCCCTACATATGGCTTTATATGAAAGAGAAGGAAAAACTGAGTGCACTGGAGATCATCAGTAGCATGAAACTACCCTCCCATGAAGAGGTTTTAGATGGGCTAGGGTTAGGACCTGAAGGTCCACCCATCCCACCTCCTGTGATATTCTCCACAGTCCCATACCCCAAGATGAGATCAGTGCCCAACACAGAGCTCTCCAGCAGCTGTTTTACCTTTTTGATGCCCACGTCATGTGCCGACCTGTCAGAGAAGAAAGAAGCAGACCTGAGATCAGAAGCTGCACAGGAAGGCATGGCAATTGCTAACACATCTAATCCTGGCCAGTGTATACCTTCTGAAGAACAAGGACTCACTCATTTCCGCTGGATTGTACCACCAAATGGAGAAGTTAACCTAAGGATAAGGTTTCACTCTTCTGTTCTTGGAAAATTTGATCAGACTTTCAGCTTTGAGGTGATGGGGACCAAGCAATGTTATCAGCTATACTGTAGAGGAATTTGTTCTTACCCATCTATAAGCAGAGACCCCAAGATTGTGTTTGCACACTGCAAAAAGATCCTGCGGCCTGAGAGTGGACTCCAAAAGACTTACATTATCCAGTCAAACCTGTATGAGTTTGGACCTCTACTGTGTGGAAAGACCAGGGACAGGTTTAAAGAAGGAAAATATCCCGAGAACATGGAGAAGTTTGTAATTCACAACAATTCTGAAATGAAGGCGGAAATTCATTTTTGCTTCGAACATGATACCAAGGCTACCACTTTCCTTCTTGACCCTCCAAATATGACACTGGAACCCAATGAGCGAAAAGTACTGATGGTGTGGGCATACCCAAATACCCCCAAACATATAGAGGACAGAGTGGTGTGCTGCATCAAGGGGAACCCAGAGCCTGTTGTTTTCCGTGTCTCCTGTGTAGGAGTCAGGCCTGAATTGGAGCTGGACCACAAACTGCTCCAGTTTGACAAAACTCCACCATACAGAAAAGAAACCCGGAGTTTGTGTCTACGCAATAACACCCTCATGCCAGCTGCTTGGAGGCTGAGGGGCCTGGAGATGCTTGGGGATGAATTCAGCGTGTCTCAGAACCAGGGCATCATCATGCCTCATTCTGAGTTCTGCGTACACATGTATTTTATAGCTAAGCACCCCATCAAATTGAAGAGATCCATTTGTTTAGAGGTGTCAGATGTTGAGAACATTCTTGGCATTGTTCAACATTCAGAGAACATTCAGATTATTGCAGAGGCCTATGATATTGCGCTGGACATAACCATTCCAGAAGATTCTGATGGTTCATTAGATTTTGGAACAATCAAAGTATCAGAAGAGGTCAAGCGGTCAATTAAGTTGGAAAACAAAGGCAAATATGACATAGGCTTTAAATTTACACTGGAGGCCACAGAGCCAGGAATGCCAGATCTGAACTCGATATTCTCCATCAGTCCTCAGAAGGGCTCTCTACGCCCCAACAATAAACCCAGTAATGTCCAGATTGTTTACCACCACAACAAGGAGATGTCCATCAGAGATAGCCCAATCCTTTGCTGTCAGGTTATTGAGCCCAATCTGGAGGGTGGGGAGACCATTAATACTATACCAATCAAAGTGTCAGTCCAGGCACTTTTCTCCAAATACAGTATCAGTCCCAATAATGATATCAACTTTGGCCCACTGGTGTATGGCTCACGTAAAAAACAGACTCTCACTGTGGAGAATAAAGGCAACTTTGAGATGCGTTTTTACATTAGGATGTGTAAAAACGCCTCCATTCCCGCACAGAGGAAAGGCTTGGGAAGTAAGAAACCATCAAAAGACAGTTATGCTACAAAACCATCCAGTGCCAGTGAATTACGACACAATATGCAGAATGAGTTTGGCATGTCAACACAGATACATTTGACATGTGGTGTTTTCTCATTGTCTCCATGCTTTGGGATTCTGGCACCTGGAGCCCAACAAGTAGTTACTGTGGATTGCAAGGCAGAGCATGAAGGTAGTTGGGAGGAATGTCTAGCAATAGACATCACTGACAGAGACCCCTCTGACAACCCAGACGGGATTCCTTACAAGCTAGTTACAGAAGTTTGTATGCCAGGAATAGCAAGTACAGACATTGCTTCTATCTTTGAGGAGCACCGTATCTGTAAGAACAGTAGCATGCTGCAGTGTGAGCAATACCGGGACAGTATGGGTGTCTATGTACAGGACGAGAACAAGTTTGTCTTCAACAATGTACTGGTGGGTCAATCAGCCAAAGCCAAGTTCCGGCTGACCAATCCTGGAAAAGTGTCTTGTGAACTCAACCTGGCGATCAAAACAGTCAAGACGACAACGCCCAATGCTGAGATTTTTGAGTTGACCCCTACCAAGATGTGCATCCCCAGCCACTCTTACGCTTTTGCCACCATCACTTTTTCTCCTTTGACTATGCACACATATCAGGCAGTGTTTGAGGCAGTTCTGAAAGGGACCATAAGTCAAACTCCTGCCCACAGACCCAAAGCTCTTGTGTTTGATCTAATGGGTGAAGGCAACTTGCCCTGCATCACTGTTCTGAGACCTGTTCAGAGGACTAATCGAGGTCAGCCAGTGCTACAGTTTAAGCGCTTATTGGTGGGACGAGGGCAGACTCTTCCACTGGTGATCAAGAACAATGGCAATGTGCCGGCACAAGTTAGCATTGTTCTACAGTTTCACCTGGAAGTTTTCACTCTAAAAGCTGCTCCTGGCACTGTATGCAGACTGGCCTCCTCACACATAGAGAGCAATCCTGGAAAA

Function

symbol description
hydin Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 5. Orthologous to human HYDIN (HYDIN axonemal central pair apparatus protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0003341 cilium movement biological_process

KEGG:

id description
K17570 HYDIN; hydrocephalus-inducing protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03387692_03454629.mRNA True 9729 mRNA 0.48 60 3387692 3454629

Neighbor

gene id symbol gene type direction distance location
CI01000013_03375650_03387110 HYDIN coding downstream 529 3375408 ~ 3387163 (-)
CI01000013_03275705_03371030 NECAB2 coding downstream 16662 3275705 ~ 3371030 (-)
CI01000013_03102811_03111426 DNAH6 coding downstream 276266 3102609 ~ 3111426 (-)
CI01000013_03051289_03084843 RANBP10 coding downstream 302434 3050467 ~ 3085258 (-)
CI01000013_02999657_03003223 NA coding downstream 384112 2999273 ~ 3003580 (-)
CI01000013_03538324_03552770 CHKA coding upstream 83695 3538324 ~ 3552770 (-)
CI01000013_03555460_03561041 KMT5B, SUV420H1 coding upstream 100750 3555379 ~ 3561593 (-)
CI01000013_03585420_03587386 ARPIN coding upstream 130623 3585252 ~ 3587386 (-)
CI01000013_03588879_03592043 NA coding upstream 134138 3588767 ~ 3592043 (-)
CI01000013_03710900_03714487 NA coding upstream 256130 3708952 ~ 3714487 (-)
G79929 NA non-coding downstream 144294 3242903 ~ 3243398 (-)
G79856 NA non-coding downstream 186982 3200487 ~ 3200710 (-)
G79852 NA non-coding downstream 192708 3192245 ~ 3194984 (-)
G79842 NA non-coding downstream 223316 3162610 ~ 3164376 (-)
G79779 NA non-coding downstream 502728 2884672 ~ 2884964 (-)
G80197 NA non-coding upstream 8837 3463466 ~ 3465034 (-)
G80243 NA non-coding upstream 20951 3475580 ~ 3475820 (-)
G80191 NA non-coding upstream 22436 3477065 ~ 3489355 (-)
G80210 NA non-coding upstream 47880 3502509 ~ 3502984 (-)
G80212 NA non-coding upstream 49225 3503854 ~ 3504284 (-)
G79690 NA other downstream 572300 2813247 ~ 2815392 (-)
G78296 NA other downstream 3360795 26528 ~ 26897 (-)
G80262 NA other upstream 110542 3565171 ~ 3567537 (-)
G80271 NA other upstream 264804 3719433 ~ 3723607 (-)
G80399 NA other upstream 449438 3904067 ~ 3906240 (-)
G80443 NA other upstream 610313 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 1102239 4560340 ~ 4567647 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location