CI01000013_03051289_03084843 (RANBP10)


Basic Information

Item Value
gene id CI01000013_03051289_03084843
gene name RANBP10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3050467 ~ 3085258 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03051289_03084843.mRNA
AGGAATGAATTTTTATCATCACACGTTTGAATTAATGGCAAACTACGGAGTCACTGTTTCGAAAAGCAAAAACAACAACATTTTTTACTTTCAAATCAAGTATATACACGCTCAAGCTCTGTAATTATGAGTTGCGTTAAAAACTACAAATCCTAGACTGCGCTTTACAGCGCGCTCCTCTCCCAATTGAATTAGGTATGGGTCATGTAGTTGATGGCACTTCCCTCATGTCAGCCGCGTGCACTGCGCAGGGCTTTGTGTTCAACTACAGTACCCACACGTCACTGTAGAGCGGCTGTTATCCGGGGATATATCACCGCTGCTGTGTTTCTCCTTAGTCTAGCGCTCTCTCCTTTTTAGCGGATTGGCACAACAGGGTAGGATTACTAGAAGGAATACAAAAACATAAGCAAAAATGGCAGAGCTTGGAGCGGGGAGCCTGCTAACAGGAGATCCTGCTTTTAATTACCAAGAGCATGAGCTAAACGAGCGTTTGAAGCGGCTGTACCCGGCCGTGAATGAGGAAGAGACCCCCTTACCCCGATCTTGGAGCCCCAAGGATAAGTACAGCTACATCGGGCTCTCACAGAATAATCTGCGGGTGCATTACAAAGGCCACGGAAAAAACCACAAGGATGCAGCATCTGTTCGGGCCACACATCCCATCCCTGCGGCTTGTGGCATCTACTACTTTGAGGTGAAGATCATAAGCAAAGGAAGAGATGGGTACATGGGAATTGGACTGTCTGCCCAGGGGGTCAACATGAACAGACTGCCTGGGACCGGCCAACCGTATGGCCCAACTTTCACAACGGGTGACGTCATTGGCTGCTGCGTGAACCTCATCAATAACACATGCTTTTACACCAAGAATGGGCACAGTTTAGGTGTGGCGTTCACAGATCTGCCACCTAACCTGTACCCCACAGTAGGGCTGCAAACTCCAGGGGAGATAGTAGATGCTAATTTTGGCCAACAGCCTTTTGTGTTTGACATTGAGGACTACATGAGCGAATGGAGGGCCAAGATCCACAGCATGATCGCCCGCTTCCCCATCGGAGAAAGACTGGGAGACTGGCAGGCGGTTCTGCAGAATATGGTGTCCAGCTACCTGGTGCATCATGGGTATTGTGCCACAGCAATGGCATTTGCCAGAGCCACAGAGACCATGATCCAAGAGGACCAAACCTCAATAAAAAACAGACAGAGAATACAGAAGCTGGTATTGGCGGGACGTGTTGGAGAAGCCATTGACGCAACACAGCAGTTGTACCCCGGACTCCTAGAACACAACCCCAATTTACTCTTCATGTTGAAGTGTCGACAGTTTGTGGAGATGGTGAATGGTACAGATAGTGAGGTACGGTGCTTTAGTGTCCGCTCTCCTAAATCACAGGACAGCTATCCCGGCTCCCCCAACCTGAGCCCCCGGCATGGAGCCACCAACGCTCACTTGCACAGCACAGAGACCAACTCTGCTGTTGACTGTGTATTTTTGTGTGTTGACAGTGATAGTGAGATGGAGATTGAGGCAGAACATTACAGCAATGGTGTGACAGAAAGCTCAACTCGCATTATGAATGGCACATACAAACACCAGGAAATCCTACAGGCGGATGACAGCAGTGTTGGCAATGGAGTAGCAGCTGCTAAATTGAGCTCCTCTATTATTCAGCCCATTAAATGTTTTTCTCCAAGGTTACAAAGAGAGAGTGTGATATTTAGTGGTTGTGAAGTTTTGTGTTGGCGTGTTGCAGTTCAGCATGGCAAACGAAGGAGACAAGCTGCTGATAGAGCTGCTGACTGCATCATATACAGTAAATCTCCTGTATGGGAACATTCTGGCTACTCGTGGACAAAACAGTCACTCTTTGTGAACTATGTTCGATGCGAGTGCCATGACAGCTGCAGCTCCAGACAGCTGTGCGGAGGAAACCAGGCGGCCACAGAGAGAATGATCCAGTTCGGCAGAGAGCTTCAGGCCCTCAGCGAGCAGCTCTGCCGCCAGTACGGCAAGAATGCCACTCACAAAAAGATGCTGCAGGATGCATTCAGTCTGCTGGCGTACTCGGACCCCTGGAACTGCCCCGTGGGCCAGCAGTTGGACCCCATGCAAAGAGAGGCGATCTGCTCCGCTCTCAACAGCGCTATTCTGGTCTCAGAATCTGCCCAAACAGCCACCTCTCATGCTGGCTCTGGGTCAGGCCACCGAGTGCGTGCAGCTGATGGCCAGAGTTCGCTCTGGTTCCTGCTCCTTCGCCAGAGTCGACAACTTTTTGCACTAGCACCAGTCCAGGTGAGAGCACCAAGGCAATGTTCAGGACGGCTACGAATAGGACTTTCCAGTTGGTTGCCACGACGAGAACATGCGTTTGAATTGGTGTGTCGCTTGCCGTTTGCCAGAAGCAGCCGAGCAGAATGAATAGAAACATGAGAAGAGAGGCTTCTTTTTAAATTAGTATTATCAAATACAAATTGTGTGACACTATTTAAAGATAATTAATTATTCTGTTTATCTAGTCATTTTTATTTTAGTTTATATTTTGTCCGTTTGTTGTGCTCATTTTGAAACAAATCAACTTCCCAAACTATTTTTTTTTTTTTCATGGGTGAGTTCAGTGCATAGTATTTCAAGCGTACCATATCAACAATATACATAATGGTAAGTTCCTACTGAAAATTTGAGCTACGCACTCTGGTTTTTCTCAGTCAGAGCTCAGGTATTTAGACAAATGTTTTTTGGTCGTCAGAGCGGGATATTTGCGGAAACAGGTGTCGCTTCACCAGACAATTCTGTGGGTTTTAAAGCAGGTCCTTTTTATGTACAAGCAAATAGATTTTTTTTTTTTTTTAATTATTTGGTCAACCTTAGCTGCCCCTTTCGGACTTGCGCATACAGAAGTTTGGCGACCTTACAATGTTTTCATTGGAGTAAGTGTGTGAAAGAGGGTGAGATATTGCATGGCTCCTAGCGTCTCACCTTTTAAGCTACTTTAGTATCTCAGGCACCAGCACGAGTTTCATTAGACACAATCACACAGTGACGACGCAGACTTGCCTTTGGGTCCAATGTAGATGAATTATATTTTCAGTCATAGACCTTTGCCCTAAATGGATCTATTTTACCAAGATTTTACCATCTTTATAGCAGTGGGTATCATGCAAATGTCAACCTTCACTTTTTTTAAGTTAGATATATTGAAGTCAACGTGGTTTTCTAATTTTTGTGGCTGTACCAAATAAA

Function

symbol description
ranbp10 Predicted to be involved in cell surface receptor signaling pathway and cytoskeleton organization. Predicted to be active in cytoplasm. Orthologous to human RANBP10 (RAN binding protein 10).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03051289_03084843.mRNA True 3244 mRNA 0.46 16 3050467 3085258

Neighbor

gene id symbol gene type direction distance location
CI01000013_02999657_03003223 NA coding downstream 46887 2999273 ~ 3003580 (-)
CI01000013_02919679_02944235 FAM65A coding downstream 106232 2919589 ~ 2944235 (-)
CI01000013_02912132_02916617 CTCF coding downstream 133850 2911191 ~ 2916617 (-)
CI01000013_02870258_02903686 CARMIL2, RLTPR coding downstream 146781 2870258 ~ 2903686 (-)
CI01000013_02834348_02858912 CFDP1 coding downstream 191555 2834254 ~ 2858912 (-)
CI01000013_03102811_03111426 DNAH6 coding upstream 17351 3102609 ~ 3111426 (-)
CI01000013_03275705_03371030 NECAB2 coding upstream 190447 3275705 ~ 3371030 (-)
CI01000013_03375650_03387110 HYDIN coding upstream 290150 3375408 ~ 3387163 (-)
CI01000013_03387692_03454629 HYDIN coding upstream 302434 3387692 ~ 3454629 (-)
CI01000013_03538324_03552770 CHKA coding upstream 453066 3538324 ~ 3552770 (-)
G79779 NA non-coding downstream 165503 2884672 ~ 2884964 (-)
G79678 NA non-coding downstream 237973 2800130 ~ 2812494 (-)
G79761 NA non-coding downstream 409912 2640344 ~ 2640555 (-)
G79757 NA non-coding downstream 416740 2633404 ~ 2633727 (-)
G79756 NA non-coding downstream 417091 2633157 ~ 2633376 (-)
G79842 NA non-coding upstream 77352 3162610 ~ 3164376 (-)
G79852 NA non-coding upstream 106987 3192245 ~ 3194984 (-)
G79856 NA non-coding upstream 115229 3200487 ~ 3200710 (-)
G79929 NA non-coding upstream 157645 3242903 ~ 3243398 (-)
G80197 NA non-coding upstream 378208 3463466 ~ 3465034 (-)
G79690 NA other downstream 235075 2813247 ~ 2815392 (-)
G78296 NA other downstream 3023570 26528 ~ 26897 (-)
G80262 NA other upstream 479913 3565171 ~ 3567537 (-)
G80271 NA other upstream 634175 3719433 ~ 3723607 (-)
G80399 NA other upstream 818809 3904067 ~ 3906240 (-)
G80443 NA other upstream 979684 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 1471610 4560340 ~ 4567647 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012791 ranbp10 coding NC_007129.7 CM002902.2 21951551 ~ 22020509 (+)
bowfin (Amia calva) AMCG00020375 ranbp10,LOC107726299,LOC107694918,LOC107733562 coding CM030127.1 CM030127.1 17425311 ~ 17432646 (-)