CI01000013_03555460_03561041 (KMT5B, SUV420H1)


Basic Information

Item Value
gene id CI01000013_03555460_03561041
gene name KMT5B, SUV420H1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3555379 ~ 3561593 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03555460_03561041.mRNA
AGAAGTACAGAAGTATACTGATGTAAGTTATCTAGCAAATTATATGCAAAGAATTAATTTTATGAACTATTGGTCGATGTGACATTATTTTTAAGACAATCGCAATTGTGAATTCTAGGTTTGTAGTTTAACTGAAGGCAGCTTTTGTTATTTCCAACTGCAGCCAGGGGGTGGCGCTCTATACTTAAGAATATTTGAAAAATAATCTCTCACAACACTTGTCTTTTTAAATTAACTGCATGCTGATCATGAAATCAACCACTACTATTTACATTATAATCATTACTATTTACATTATAATCATTTTTAAAATAAATGAATTTGATAAGCAATTTATATTAATGATCTGTTATTTTATCTAGGTGAAGTAACATCTGAAGAAACGAGTTAAGTTTGATTCGGAGTGCCCTGGCAGATAAGACAACCGACCAGGCTTCAGCCCAGTTGTTTCTGCTGTCTCCTTGTTGAATGGTTTCTCACAAGCACACAGAAGCTCAATGCGCCTTCTCCAGACCTCCAGCTGGTATGAAGTAGATGGGAGAATCCAAGAACATGGTGCTGAATGGCAGGAGACATGGCAGCAAGTTCTCCAGTAATCAGCCCGTAAGCAAGTCCAGGCTGCAGAACACACAGAGAGCCCATCTTCGTCAAAGCAAGGGCTCACCGAGTGGCAGAAGATGCAGTCGACGTTGTGGTGGGGCGCCCCCGGAGGCAGAAAGGCGCCATGTCCCCTCATCGGGAATGACTGCCAAGGAGCTGTGTGAATATGATGATCTGAGCACTAGTTTGATCCTGGATCCTTATCTTGGCTTCCAGACCCACAAGATGAACACCAGGTTTCGACCAATCAAAGGTCGGCAAGGGGAGCTGAGGGAGGTCATCGAGCTTTTTAAGAAGCACGACAACCTGGAGAAAGCTTTTCAGGCTCTGACCTCTGGTGACTGGACGAGACATCACTTCCTCAACAAGACCAAGTCCCAGGAGAAGCTGTTCAAAGCACATTTTGTGTCAACAGGCCGAGATACTGCCTGTGTAAAGGTTCTGCGGGACATTGAACCGGGCGAAGAGATCTCCTGTTACTATGGAGATGGATTCTTTGGAGAAAACAATGAATTCTGTGAATGCTATACTTGTGAAAGACGCGGCACTGGAGCTTTTAAGTCGAAAGCAGGGTTGCCTGTGGAGACTCCGGTGATCAATAGCAAGTACGGCCTCAGAGAGACAGACAAGCGTCTGAACAGACTAAAGAAGCTGGGGGAAAGTTGCAGGAACTCTGACAGCCAGTCTGTCAGCTCCAATGCAGAGGCAGACTCTCAGGAACCAACCACTGTACAAACATCATTACGTAAGAGGACTTCGCAGTCCTGTGTCAAAAAGCACGGAGAAGCAAAGGCTGTAACAAGGCAAACTCTGTCAAGCACTCCTTCTTCTACCTCATCCTCTAAACGAAGTCAAACGAATAGTTTACCAAAGAGACTCAAGTCAAAGTCCACACAGCCTTTGTCTAAAGGAAGACGACGGTGTCGAGGCGTATGGACAAAAGCCTCTAGTCGAGTGAACGCTAGTGGGAATCTCAAGGAGCCCTCCAGACGAGACGCGGACAGACGCAGCTCTGGTGGCAAAGGCAGTGTAGCGCGCCAATCGGAAAACAATCAGAGCTCTTCGAAGGGTGCTTCCCTGTGCAAGGACAGCATACTTTGCCCTTACAGAACTCGTAGGTCCACAAGGACCTCTCTCAGTGCTGAGGGGTCTGACGGCACGCAGGCATCGAGTCAGCCGTCTAGCCCGGGTGTGGTCTTCAAGTCGGAGCCTGGAGAGCTCATCCCTGTGACACCTGGGCACCAGATGAACACCCCTAGTTTGGAGACCAGCTGTCCTAAGAAAGGGACGTGTCCTAGACGCAGGAGGACGATAAAACAGGAAGACACCAGCTCCTATGGCGAGTCCTTCCTCCAGGAGGGTGTGCCCGACCTGCGGCACGCGGTTCGGGCTGCAGATGTAGCAGACTGTGGGAAGGTAGTGCTCGGCCTGCCGGACCGCCACCAGCACTACAACGGCTCGGCTAAAAGCAGCAAGGGTCTCCGCCGAGGCAAGGGCAAGAAGAAGCGGCAGATCACGCGTTATGACGCTCAGCTGATTCTGCAGAACAACTCAGGCATCCCCAAGATAACACTACGCCGGCGTCGAGACAGCAGCAGCAGTAAGAACGAGCCCAGAGAGACCAACTCTTCGAGCTCCTCCAAAATCAGCATCAAGTTCAGCAAGGAGCATGAGAAGGACAGGAGCAGCTCGTACGTGGCCAAACTGAACAACGGCTTCAGCCACGGCTCCCACAGCAGCTCCACCAAGCTCAAGATCCAACTGAAGCGGGAGGAAGACGGCACCGGGTTGCATCGCGCTTACCCGGATGACGTCACCTTGGGCATCGTGAAGCGAGAAGGGGGCGATGTTTTGGATCACAAGGCGGCCACTCAGGTAGGTCAGAACATGGAAGTGGAGTCGCTGTCCTCCGAGGACGAAGAAGAGGACTACTTTGATAACGAGGATGATTTCATCCCGCTCCCACCAGCAAAACGTCTGCGTCTCATCGTGGGCAAAGATTCCATAGACATTGACATTTCCTCCAGACGACGAGAAGATCAGTCCCTCAGACTCAATGCATAAGCTGTGTAAATATCCATTGTCTCAATCATGTTCATTTTGAACATATGTAATTTAAATAGAAAATGCAAATGTACAATTAAA

Function

symbol description
kmt5b Predicted to enable S-adenosyl-L-methionine binding activity; chromatin binding activity; and histone methyltransferase activity (H4-K20 specific). Acts upstream of or within histone H4-K20 methylation and regulation of growth. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 51. Orthologous to human KMT5B (lysine methyltransferase 5B).

GO:

id name namespace
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11429 SUV420H; [histone H4]-N-methyl-L-lysine20 N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03555460_03561041.mRNA True 2745 mRNA 0.49 6 3555379 3561593

Neighbor

gene id symbol gene type direction distance location
CI01000013_03538324_03552770 CHKA coding downstream 2609 3538324 ~ 3552770 (-)
CI01000013_03387692_03454629 HYDIN coding downstream 100750 3387692 ~ 3454629 (-)
CI01000013_03375650_03387110 HYDIN coding downstream 168216 3375408 ~ 3387163 (-)
CI01000013_03275705_03371030 NECAB2 coding downstream 184349 3275705 ~ 3371030 (-)
CI01000013_03102811_03111426 DNAH6 coding downstream 443953 3102609 ~ 3111426 (-)
CI01000013_03585420_03587386 ARPIN coding upstream 23659 3585252 ~ 3587386 (-)
CI01000013_03588879_03592043 NA coding upstream 27174 3588767 ~ 3592043 (-)
CI01000013_03710900_03714487 NA coding upstream 149166 3708952 ~ 3714487 (-)
CI01000013_03726253_03740014 NA coding upstream 164524 3726117 ~ 3740408 (-)
CI01000013_03793962_03821347 CFTR coding upstream 232052 3793645 ~ 3821347 (-)
G80252 NA non-coding downstream 40290 3514884 ~ 3515089 (-)
G80201 NA non-coding downstream 46867 3506619 ~ 3508512 (-)
G80212 NA non-coding downstream 51095 3503854 ~ 3504284 (-)
G80210 NA non-coding downstream 52395 3502509 ~ 3502984 (-)
G80191 NA non-coding downstream 66024 3477065 ~ 3489355 (-)
G80264 NA non-coding upstream 6425 3568018 ~ 3568222 (-)
G80294 NA non-coding upstream 69728 3631321 ~ 3632270 (-)
G80311 NA non-coding upstream 98284 3659877 ~ 3660663 (-)
G80275 NA non-coding upstream 145138 3706731 ~ 3708204 (-)
G79690 NA other downstream 739987 2813247 ~ 2815392 (-)
G78296 NA other downstream 3528482 26528 ~ 26897 (-)
G80262 NA other upstream 3578 3565171 ~ 3567537 (-)
G80271 NA other upstream 157840 3719433 ~ 3723607 (-)
G80399 NA other upstream 342474 3904067 ~ 3906240 (-)
G80443 NA other upstream 503349 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 995275 4560340 ~ 4567647 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012784 kmt5b coding NC_007129.7 CM002902.2 21113216 ~ 21120218 (+)