G80275


Basic Information

Item Value
gene id G80275
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3706731 ~ 3708204 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU91397
AATAAATGAGAATTTTCATTTTTGGGTGAACTAACCCTTTAAGATATGCTCTCCTAAACCTTTATGAACAGCAGTTTTTATTGAAGAATATTAAATGCAAAAGAAAAACACTGATAGCTGAGAGCAAATAACTTTTATAAGTTTTATCTCTAAGGTCCGTCATGATGAAACCATCTGGTGAATTAGGTATTTTAACACGATTATTGCAGTATTGCAGTGTGATCAAAAGCAGTGTGATTTTTGCATTGCCAGGCATGTGATAAGGGATGCAACAGACACGCCATTAGGAATCCTATAGGCATTTTAGCTCACACCATGACTTCCTCTCTCTCCATTCCTGGCAGCTTGTACTTTGTGGTGCTTAAAGAGTTTTTTTTTTCTTTCTTTTTTAAATCAAGAGACATGACAGAGGATGATAAGGTGTCCTCTACAGAAAAAGCGAGATGTATTTTATCATTTCATATACTTACACATTTAAAAATAAAAGAGAATGAGGTAGATAGATGCTGAAGGAAATGAAAAAAGAAAGTCCCCCAGTCATGACATCATGGAAAATGCATCTAGAATCAGACTTTATACTAAATCATAAGGGCATTTGTACAGTGATTTCAACTGGTATCACACACACAAAAAAAAGGAAATTAAATAAATACCCCTTCCAAGGGGGAAAATAACCTTCTAAGACAGGATAAATAAGTCCTGGGTAACGTTCCCAAATACACATGGAGAAATTCTTCAAAACTAAACTTTTTTTTTTTTAAAGCCAACTAGCCATGGAAACCTAATGTTTTATTTAGCAATCTTTGAAGAAACCGATCACTTTTCTGAACTTGAACCGATTCTTATTTGGTTACAGATGGCATATTTCATCAGGAAGTTTAGTGCTCATTGCTTGGATTTATAAAATTGAGGTGATTACAGAGATTATAAATGCATCTTGTTTGGAGGTGATACAGGCTGGTTGGCATATGGAGAGAAATTAAGACAACCCAATTAGCCCTGTTAGTTGCTATTCAATTACATGAATGGGTTACAAAAACAGTCTATAAGGGTAAATAAATGTAAATGAAAAATTCCATGACAATGCCTGGCAGGAGGCATGAGCACGGACACTGACATACTGTACGGTTTACTACACTGTAAGGAGAGGCCAGCAACTAAAAAAGCTGAGGAATCATCTGATGAGAACATGATGTCTGGAGAACAAAACTGTAACATTAACCTGAGATTGAGCTGCACCTCATGAGTAGGTGCAGTGGTAGACAACTGTATCAAGGGTGCCTAAAGTTCACATGCAGAGCTAAAGAGTTTGTTGTAATTAATAATAATAATAATAATAATAATAATAATATAGAGAAATGTTAAACACAAGGCAATGGACATGTGGCAATGCAGACAACCTCTTAGGGAGAAAAAATAAAAATAAATTGCTATTCTCTTTTTTTGTATTTTTTCTCTTTTTTTTGCAAGAAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU91397 True 1474 lncRNA 0.35 1 3706731 3708204

Neighbor

gene id symbol gene type direction distance location
CI01000013_03588879_03592043 NA coding downstream 114688 3588767 ~ 3592043 (-)
CI01000013_03585420_03587386 ARPIN coding downstream 119345 3585252 ~ 3587386 (-)
CI01000013_03555460_03561041 KMT5B, SUV420H1 coding downstream 145138 3555379 ~ 3561593 (-)
CI01000013_03538324_03552770 CHKA coding downstream 153961 3538324 ~ 3552770 (-)
CI01000013_03387692_03454629 HYDIN coding downstream 252102 3387692 ~ 3454629 (-)
CI01000013_03710900_03714487 NA coding upstream 2555 3708952 ~ 3714487 (-)
CI01000013_03726253_03740014 NA coding upstream 17913 3726117 ~ 3740408 (-)
CI01000013_03793962_03821347 CFTR coding upstream 85441 3793645 ~ 3821347 (-)
CI01000013_03875165_03877327 NA coding upstream 166904 3875108 ~ 3877458 (-)
CI01000013_03879587_03884308 WEE2 coding upstream 171129 3879333 ~ 3884308 (-)
G80311 NA non-coding downstream 46068 3659877 ~ 3660663 (-)
G80294 NA non-coding downstream 74461 3631321 ~ 3632270 (-)
G80264 NA non-coding downstream 138509 3568018 ~ 3568222 (-)
G80252 NA non-coding downstream 191642 3514884 ~ 3515089 (-)
G80201 NA non-coding downstream 198219 3506619 ~ 3508512 (-)
G80324 NA non-coding upstream 18746 3726950 ~ 3727387 (-)
G80325 NA non-coding upstream 20948 3729152 ~ 3729392 (-)
G80326 NA non-coding upstream 23394 3731598 ~ 3731797 (-)
G80364 NA non-coding upstream 74048 3782252 ~ 3782682 (-)
G80262 NA other downstream 139194 3565171 ~ 3567537 (-)
G79690 NA other downstream 891339 2813247 ~ 2815392 (-)
G78296 NA other downstream 3679834 26528 ~ 26897 (-)
G80271 NA other upstream 11229 3719433 ~ 3723607 (-)
G80399 NA other upstream 195863 3904067 ~ 3906240 (-)
G80443 NA other upstream 356738 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 848664 4560340 ~ 4567647 (-)
G81032 NA other upstream 1040605 4748809 ~ 4750561 (-)

Expression


Co-expression Network