RNA id: TU90919



Basic Information


Item Value
RNA id TU90919
length 2740
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G79852
representative False

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3192245 ~ 3194984 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCTTTTATTTATGTATAGCAATAGTTTTATTTATATAATGTATAGAATATACTGGTATGTAGAAAATAATTGTGTTGACAGACAGAAAAAGTTTTCTTTCAAACACCTTCAACAATGTGAGATCATTTTTTTTAAAAGACAATTAATGTTTTTTAATTTTCTTTGTAGTGAGCAGGGCACAGCTTAAAATGAGTGAGCGATCAGCAATATATAATAAGATTTCAAAATAAAAGGAGAAAACACTCTTTTTTTTTTTTAACATGCGATTCATAAAATTCATCTGCCAAGCAAATTATAACAGCCTCCAAATATTGTATATATAATGGCCAAAGATTATAAATAAGGGAGGCATTAATGAAAACTATGTAGCAAGGAGTGATGTACACATAAAATCTGTACATATTAGCCCTTACTATATTATTTAGACATATATTCATTAGATTGTACTACATTGACTGGTTATGACAATAGTGGAATTTGACTTATAACAAAGAAAAGCATGTGTTGATAGTCAGTTTACTACATAAAAGCAAAATTTGAGGCATAAGTGGCAGTCCTCCCCTATTAATTTTTTTTTCAGACTAAATAAATGGCTTTTGCCCTCCTTAATAAGTTCACTGCATTGGCAAACATGATTGATTGCCAATTAAGCCTAAAAATTAAACATAAATCACATTGACTGAAGAATCCGCTGAGCGGAGCAGAGCACAGTGTTGAATGGAGGTAATGAAAGCTGATCTGGGGAAAAACCTCCCTTGCTTTACACACAAAGTCATGTATCCACAGAAATACACTGTATGCTCATATTTATGGTGATAATCATACACTATTTGATCTAATTGATGTTAATATGTTCACCTCCATTGATTTGCCTCATCTGTTAATTATGCACTTAATGATAATGTGTTTCATATAATATACTCATTCAAATAAGCTCTTCTTTACAGCATATCGGTCATATTTACAATATATTTCCATCATGAAGTGATTTTTTTAAGCTAATCCATCATTTTGTGTGTCATTACAAATACATATATCTGAAAAAATAAAAAAGTAGCTATGAGGAATGTGTAATGTAAGACTATACAATATATACACATTACTCTGACCAACATCAAATGAACAGCAGTTCCATACAGATACAGACTAGTACAAAAACACCTTGAAGCGTAATGCTGTGCTATTTGGTAAACTGAATCAATGAACCTGTCAATAATTATTTGGGTTTAAACCGTCACCCAAAGGCATTCAGACTACAGACAACAAAGTCTGACAAGTCTGTTCCCAGGCAAAGCCTTTAGGTGAGCCGTGTTGCTTAGATTAACTTTTATTAGGTGTAATCCTTAAACTTAATCCTCTCAGGATCCTACAAAAGAGGATTACACTACAGGGTGAAATAACATTTTTGAGGGCTCTTTACATTACTTTCATACTCATTGCTCATCAATGTGATTTCAGTATACCTTCATTTAATTTCCTCCTAGATGAAGGGGTTCGAATATTTGGAAATGTCTTTCGGCATCTTCGATTTGTCCTCATCAGGCCTGGAGTCATTTGAGGTGCATTTTGGTCCTCCTATGGACATTTGAATTGTGCCATGATTGTGCTTAAAATTAAGTTTGCTATTTTAAAGCTAGGGTAGGCAATTTCGGAAAGGCTAGCACTAGCAAGCTAGCTTTGAAAGCATAAGATCCCACCCCCCTTCCTTCAGAGCGCGCTCCAAAGCCACGCCTCTTCCAAAACACATGAACGCGCACTGCCGAAGCAGAGTCTGCAAAGCGTCATGAAAGACGGCGTAAAATTACATAGAACATAACATTACAATAATAATGAACGTAAATAACTTAAAGGCACAATATGTAAATTTTCGCCACTAGAGGTCGCTTATTCAAAACAAAGGCGTAGTTTAATGACGCCTTGATTTCACGGAATCATGGGAGGTGTTGTCTTCACCTCACAGCCGGTGGAAAAGAACCGGGATGGGACTAGGCCAGAAATCATGTTTATGGATTAGATTATGAATGTTACAGTAGTATGAAGCAGAGCAGGGCCGAGTGCTGTCGAGCAGAAATTAGGCCGCTGGAGCGATTGCTAATTAGAGACGAGCGCGACACACGGATCGAGAGCAGCGGAACTTTTATTATGCTGCAGTCGCTGCTTCCGCTTCTTCCGGTCAAGCGTATGTGGGGTAAAGAAGTGCTGTTTTATCGTATTAGATACATTTGTGTGTTGAAAGTTGTTATAGTCAGAGGTGTAAAGAGTACCTGAAAACCATACTTGAGTAAAAGTACAGATACCTTACATCGAAAATGACTCGACTACAAGTTACAAGTAACCAGTGCCAATACGACTTGAGTAAAAGTCTTAGAGTATCTGATTTTAACAGTACTTAAGTATTTTACTCATGCTGAATGTAGGCTCAGAGTTCCACTAGTCCGCAACACCTGAGAGACATGCCGGTGAAAATAAGAAACAATTGATTTGTAAGATGAGAAATCAAGTTTATTTTCAACATTGCAATAAATCAAGGTCGACACAACAACCTTTTAAATGTCTACAAACTCTCAAGTCTCAGTTAAGCTCAAGTGACAAAAAGGTCACAAGTAAACCAATATCCTTCAAAAAGGTCTTGTCAATATAGCGGATAAATAAAACAATGTGGTAACACTTTATAATAACTCACGCTATGAAGCATTAGTTAAGCATTAGTAAATAGTCAATTCATCATTTATAAAGCAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU90908 lncRNA downstream 27869 3162610 ~ 3164376 (-) True G79842
TU90840 lncRNA downstream 307281 2884672 ~ 2884964 (-) True G79779
TU90735 lncRNA downstream 379751 2800130 ~ 2812494 (-) True G79678
TU90819 lncRNA downstream 551690 2640344 ~ 2640555 (-) True G79761
TU90815 lncRNA downstream 558518 2633404 ~ 2633727 (-) True G79757
TU90935 lncRNA upstream 5503 3200487 ~ 3200710 (-) True G79856
TU91011 lncRNA upstream 47919 3242903 ~ 3243398 (-) True G79929
TU91316 lncRNA upstream 268482 3463466 ~ 3465034 (-) True G80197
TU91362 lncRNA upstream 280596 3475580 ~ 3475820 (-) True G80243
TU91309 lncRNA upstream 282081 3477065 ~ 3489355 (-) True G80191
CI01000013_03102811_03111426.mRNA mRNA downstream 80819 3102609 ~ 3111426 (-) True CI01000013_03102811_03111426
CI01000013_03051289_03084843.mRNA mRNA downstream 106987 3050467 ~ 3085258 (-) True CI01000013_03051289_03084843
CI01000013_02999657_03003223.mRNA mRNA downstream 188665 2999273 ~ 3003580 (-) True CI01000013_02999657_03003223
CI01000013_02919679_02944235.mRNA mRNA downstream 248010 2919589 ~ 2944235 (-) True CI01000013_02919679_02944235
CI01000013_02912132_02916617.mRNA mRNA downstream 275628 2911191 ~ 2916617 (-) True CI01000013_02912132_02916617
CI01000013_03275705_03371030.mRNA mRNA upstream 80721 3275705 ~ 3371030 (-) True CI01000013_03275705_03371030
CI01000013_03375650_03387110.mRNA mRNA upstream 180424 3375408 ~ 3387163 (-) True CI01000013_03375650_03387110
CI01000013_03387692_03454629.mRNA mRNA upstream 192708 3387692 ~ 3454629 (-) True CI01000013_03387692_03454629
CI01000013_03538324_03552770.mRNA mRNA upstream 343340 3538324 ~ 3552770 (-) True CI01000013_03538324_03552770
CI01000013_03555460_03561041.mRNA mRNA upstream 360395 3555379 ~ 3561593 (-) True CI01000013_03555460_03561041
TU90747 other downstream 376853 2813247 ~ 2815392 (-) True G79690
TU89207 other downstream 3165348 26528 ~ 26897 (-) True G78296
TU91381 other upstream 370187 3565171 ~ 3567537 (-) True G80262
TU91391 other upstream 524449 3719433 ~ 3723607 (-) True G80271
TU91525 other upstream 709083 3904067 ~ 3906240 (-) True G80399
TU91578 other upstream 869958 4064942 ~ 4066017 (-) True G80443
TU92144 other upstream 1361884 4556868 ~ 4558903 (-) False G80954

Expression Profile