G436319


Basic Information

Item Value
gene id G436319
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 8965702 ~ 8970622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU500854
AAATACCTGTTTTCCATTTTAATATATTTTCAAATGTAATTTATTCCTGTGATGTCAAACTGAATTGTCAGCATCATTACTTCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGAAGATTTGCTGCTCAAGAAACATTTCTTATCATTATCAATGTTGAGAACAGTTGTGCTGCTTAATATGTTTGTGGAAAATGTGATAAAAAAAATTCAGGATTCTTAGATGAATAGAAAGTTCAAAAGAACAGCATTTATTTGAAATCGAAATCATTTTTAACACTATAAATGTCTGTCATTTTTGATCAATTTAATGCATCTTTGCTGGAAAAAAAAGTAATTTCTTTAAAAAAAAATCTTGCTGATCTCAAACTTTTGAATGGTAATGTGTAAATACTATTAGTTACTGATAGTGATGTAGCTTATACTTTAGGCCATTGTTGACTCTGTAGAGTACACTAATTAGCCTGCATGAAGATGTACATCTGAATAAACAATGGAAGAAAGCAGTTCTACGTACAGTACCATCCTCCCATAAAAACATGATACAGCTCTATTCATCTCCATGACAGCAAAAGACAGTAATGGTCACATTGTTTTGTATAAATAAAGAAAGTGCAAATAAATACATTGTATTATGTAATGGGTGGCTCCATATAGCACACCATTCAAAATAAGGGTAAAGACGGCCCACATTAATCAGCACAATGAGCTGTAAATGCAACACAACTCAACATATGCTGCACTGAACTGAATCAGTATATGTCAAGCTTTCTGTGACTAATGTCTTTATTGAACAACGAAACAATCTGGCTTTGTTACTTCATCCCATGTGTGATATCTACAGTTTGAAAAGAAATACAGCAGACAGACAAGGTTCTCCTTTGCATTATAAATAATAAATAAATATAAATTGATTCACAACACCTTTTATAAGTTATTTTTGTCATATTTGTTACTCAATTTTTAAATAAATTAAATACTGCAGTAGAAATACAGTAGAAAAAAAGTTATTCTCTCAAAAAAGTTAGTTAATTTAAATAATTTTGAGTATGTTAATAAACCTTAGTCAGGATTGACGTCATATTTTTGATGCCATATATATTATATCAGTATTTTTCCAAATGAAAACAAGGCTGTGAGAGATCATGTTTACAAAAGATGTTGCATGTGAAATATGGCACCTACACTGACTGTTTTATTTAAAGGTTGGTTATGCTTGATGACATTAAAAGTTTAAGCAACAAATAAGTAATTTCTGTTCATATTCAAACCCTAATAAGCTCTGTGTTTGTAAACATGTGGATGGAGTCACCACTAGAAAGAGTTGTGATTGGATTAAAGGCATTTACTGATCATTGGTTGTTGCCATGTTGTCAAGTCAATATGACATCAAAATTTACCCTGTTTGCTTTCTGAACGCATGTTGCTGATCTTATTGTGAACCATTTATTTGTCTTACAACAAAATGCAACTTGTAGATTTGAATGCAAGTTTTCAGTCGATTGTAAGGAAGGGCTGGGGTTTAAGTTGACAAAATGATTGGAGAAGTGTAGCATGCGTCACCAGAGAGAAGTCTGTTCTTTCACCAGAAGATTGAGCTTTGATTCAAAATTACGAGGGCAAAACTAATTTTTAAAAAGTAAAACAGGGATTGATGCTTTTTCGCTAAGGAGCACATGTGAAAAATTTAGGAGTGCATTAGAAAACATTAGGGGCGCAATGAAAATTGATCAAATAATGTGTTTTTTCTTAATAAAGGGACAAAAGGAGACATTTACAAGCAAAATTATTTAATTTATTACAATATAAAAAAGTACACTAGGTTTTCTGCTTCAAACGATTTAATAAGTATGTAAATATTTATAGGCCTACTTTAAACTGTATATATATTTTTTTTCTTTTTTTTCTCAGGACTCTTATTTTGAAGTGTCTATGCTTCACTTTTGTACATTTTACAATATAAACACCATAAAGTAAACATTATCATAATTCATTAACAGTAAATCAATTAACAGCAATCATTGGGCATAAATGCGCAGTATTCATTGATTGCAAACTGCTCCGAATTGGAGCGCCGCATTTTTCCCAGACAGCAACATGGTGTCGGTCCAGATCTGGCCCACGTCTGGTCCGCGTGTAATCCACATGTACCAGATGTAGGCCGGATCTGGGCCACACTATGTTGCTGTCTGGGTTACTTGGAAACGTGTGTGGTGCTTATATTTATTTAATGAATCATAGCATTTTTGAAGTTTAATAACCACATTAGGCTGTGTTGTGATTCCTGTCTTTCCATTCCAGAATTTAGGATCTCTTGAAATGGTCATTAGGATGTTTAGTATACTATTTAAGATATTTAAGACTTGTAATGACCTTAAATTTCACAAAACTGATTTTTGTTTACTTTTTAAAAACCCATGAGGACTTTTTTTTTATTTGCACACATGCTCCTAGATACATTTTACTACTTTAAGTGCAACTGCGAGTCAAATGCACGCACTGTTGAGCTCTGGCATGAATGAATCGTTCACAATAAGATCAATAACATGCATTGTGGGCAGTTGTGGCCTAATGGTTAGAGAGTCTGACTTGTACCCTGAAGGTTGTGGGTTTGAGTCTCAGTACTGGCAGGAAAATGTAGGTGAGGGAGGGAGTGAATGAACAGCGCTCTTTTCCACTCTTATTACCCACAACTGAGGTGCCCTTGAGAGTCTAACTTGTAACCCGAAGTTCGTGGGTTTGAGTCTCAGTACTGGCAGGAAATTGTAGGTGAGGGAGTGAATGAACAGTGCTCTCTTCCACTCTTATTACCCACAATTGAGGTGCCCTTGAGCAAGGCACCTAACCCCCAATCACTCCCCAGGTGCCGCGGCAAAAATGGCTGCCCACTGCTCTGGGTGTGTGTTCACGGTGTGTGAGATTTCAATACTCACTGCTGTGTGTGTGTACTTGGATGGGTGAAATGCAGAGCACAAATTCATACTTGGCTACACTTCACTTTCACTTTAGAAAACAGACAGGGAGAATATTTAAAGCAAAGCTGAAAAGTGCTAAAACCATCATTTGTAAAGTAATAAAAATGCATTACAAAAATGAATGATTATGACTCAAAATTTGAGAATTTGAATGTTTTTGAGTAACTTCTCAATGTCATGAAAATCCCATGAATATTTTAGGTAATCTCTTCTGGTATTTGCCCCGGTATCCTAAAACTAGTCTGGTCCAGCGTGCTCCTCTGTGTAGTCATGTGGTAGCTGCATCTAACCCCGTCCCTGTCACCGTTCCTGTGCAAAAAATGAAAAAAGTCTTCGTTCCCTGAACGTTCGTGGCCCGACACCGAGGGCCGCACTGGCCTGCTGGCTGATCGGCAACACAAGAGCATCTTACACAACTCCTCTCTGATCTGACGGTTCAGTAGGCCATAAAAAAATGGGTTTACTGCAAACGTCGAATACGCCAACCAGGTGACCGGTCCCTCGGCTTCTTCAGAGGTACTATGGGAGAATCCCAGCGACAGATGCAGGTGGAAGGCAAAGTAAGGCAGCCAGCAGAGCAGGAACTGACCCACGATGATGGCTAAAGTAAGTGCTGCTTTCCCGCCAACCAGTGTTCTCTTCTTCCTGCGAGGGACTGGATTTCTGCGGATGCTAGTGCTAGTGGTGATGATTGTGGTCTGGCTGTTGACGGAATCAGACCGATGCTTCGGATGAACAGTTTCCATCGTCCAGCTCGGGATCGGCCCTCTTTCCCGGGCAGCCGTGTGGGCGACTTTATAGACATTCCCATAGACAGCAATAATAATGGCAGCTGGCACGCAAAAGCAAACCGTGCAGAATAAAATGGCAAATACTCGTCGATGTCCGCTGTGGCTCCAATGGAGAGAGCAGTGGGTTGCGGCAATGGAGCTTCTACTTCCATAACTGGGCCATCCGAAGACGGTAGCAAGTCCTAGCAACGTAGACGCCACCCAGACGAGTCCCATCACGGCTGCGGATAACCAAGGCGTCATTTTAGCCTCGTACCTCATGGGATGCACGATGTAGAAGTAGCGTTCGATACTAATCACAGTAACTGTAAAGATAGAGGCAGATATAAGAAAGGCATTGAGGAATATGTACAATCTGCATTCGAGTACGGAAAAGACGACACCGGCGAAGAAGGGCGAGCCGCAGACGATGCCGAGAGGCATGAGGAGGGCGGCGCAAAGCAAATCCACGATGCAGAGGTGACACACCAAACTAAACTTGCGGAGATGGGGCACTTTCACTACTACGGCGAGTACTCCGCTATTGGCCAAGAGTGCTAATGCATTAAGAGTCACCATGACGACGAGCCCCGACATGTCTCGTAAACGAGATTGTGGGTTGGACATGCTCCCTAACTGCATGCTGGGAGCCAGATGCATAGGGTGGCCATGAGTCAATGTCTCATTAAGTTCAGTTTCGTTAAGCTCTGCTGTCGGAGGTAATCCAGACGCCTCCATTGTTTACAGTGTAGCGCACCAAACACAAAGCAGAAACGCAGGCTTCTCCATCTTCCACCAGTCAGAAATGGGGACTCATTGGCTGGAGGTCAAAGGTCAGCGCTGTTGAAAGAATAATATGAAACACAAAAATCATTATAACTACAGCTGAATACATTCACAGCAACAAGTTTACAAATTTAAAGGTGCATTAAATGATTTTAGATGTTTGGCTTTTTTACATTTTTTTTTTTTTTTTTTTTTAACTGTATTTGCAGTTCCCCTTTGGAAATCACATGCTTTTTATTTTTATAAATTAATTAATATCAAGATTACTTTATAATTAATACTTTATAATTATAAAATAAATAAATCTGGGATCTTTTATTGCTATTTTTTTTTTTTTACTTTTTAACTTATTCACTTTTGATTATAGATTAAATGTTCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU500854 True 4921 lncRNA 0.39 1 8965702 8970622

Neighbor

gene id symbol gene type direction distance location
CI01000306_08953503_08960561 RRP9 coding downstream 4920 8953040 ~ 8960782 (-)
CI01000306_08950728_08950975 NA coding downstream 14727 8950629 ~ 8950975 (-)
CI01000306_08868661_08869685 GPX1A, GPX1 coding downstream 95656 8868182 ~ 8870046 (-)
CI01000306_08864809_08865809 BRK1, BRK1.S, BRK1.L coding downstream 99489 8864794 ~ 8866213 (-)
CI01000306_08862287_08863560 SETMAR coding downstream 102142 8862119 ~ 8863560 (-)
CI01000306_08977329_08982584 NFYA coding upstream 6660 8977282 ~ 8983344 (-)
CI01000306_08986353_09011689 SORT1A coding upstream 14783 8985405 ~ 9012125 (-)
CI01000306_09013366_09014513 PSMA5 coding upstream 42449 9013071 ~ 9014513 (-)
CI01000306_09017460_09019520 PSMA5 coding upstream 46380 9017002 ~ 9019869 (-)
CI01000306_09054500_09064951 NA coding upstream 83547 9054169 ~ 9064951 (-)
G436386 NA non-coding downstream 41922 8923570 ~ 8923780 (-)
G436383 NA non-coding downstream 43762 8921614 ~ 8921940 (-)
G436337 NA non-coding downstream 138251 8826604 ~ 8827451 (-)
CI01000306_08699884_08701812 BHLHE40 non-coding downstream 262542 8698569 ~ 8703451 (-)
G436308 NA non-coding upstream 2406 8973028 ~ 8973478 (-)
G436405 NA non-coding upstream 119508 9090130 ~ 9090826 (-)
G436311 NA non-coding upstream 127850 9098472 ~ 9103121 (-)
G436413 NA non-coding upstream 146152 9116774 ~ 9117062 (-)
G436415 NA non-coding upstream 150005 9120627 ~ 9120991 (-)
G434338 NA other downstream 2098766 6866656 ~ 6866936 (-)
G434086 NA other downstream 2513451 6437406 ~ 6452251 (-)
G434016 NA other downstream 2604059 6355180 ~ 6361643 (-)
G433985 NA other downstream 2768492 6196107 ~ 6197210 (-)
G433670 NA other downstream 2924419 6041014 ~ 6041283 (-)
G436446 NA other upstream 685657 9656279 ~ 9671776 (-)
G436626 NA other upstream 864403 9835025 ~ 9836323 (-)
G436643 NA other upstream 1051526 10022148 ~ 10025375 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003596 GPR62 coding NC_007122.7 CM002895.2 36231248 ~ 36237676 (+)