CI01000308_00657092_00659557 (SCN2B)


Basic Information

Item Value
gene id CI01000308_00657092_00659557
gene name SCN2B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 656991 ~ 660488 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_00657092_00659557.mRNA
GTTTAAAAAACAGCTTTTTCATTTGTTGGCAATAAAATTTTAACTTATACTTAAATGAATTACTTCAAAGTAAATTTTTGTGACTTTATGTTTAAAAAAACATGTACCAATTAGATGGCAGGAAAATCACATGGCTGGAATTATACATGTGTGTATTTACATATCTCGTAGCCTGTCCAGTGAATTCCATGGATGTGCTGGTGCCACAACAGATCAACGCTCTCAATGGCACTAATGTCAGAATCCCATGTGCATTCACCTCATGCTACAAGCTGGACCCCAGCAAGTTTGCCATGAACTGGACCTATCAGGAGACACTCAACAGCACAGAGGAGATGTTCATGACTTATAAGAACAGGATAACACCCCTGAAGTCAACCCGATTTGGAGATCGGGTCATGTTTTCTGGAAACCTGGAGAAGAACGACCTCAGCATCACTATTTCAGATGTGCAGTTGACAGACGATGGAATCTACAATTGCTATGTGCGCAACCCTCCAGATCGCATTCCGGGTCACGGCACCATCCAGTTCAACGTCCTGACTGAATTGCCACCACCAAGGGATTCGACCATTGCTGTCGCCATCGGGGCATCTGTGGGGGGCATTCTTGCTTTGCTCATTCTGTCCATGGTAGTGGTGAAGTGTATTCGTAGACATAAGAACCAGGAGCTGATCTCAGACGAGCAGAAGATGGAGGAAGAGGGCAAAGTCGATGGAGAAGGGGGAACAGAAGAAGCAACAAAGTAAGAATTTTGTTCTTTTTTTCTTTCCCAGAATTTGAGTGTTTCTTCTCTGTAAACAAACTGCTTACTTTGAATCCTGAAACAGACAGCCCTAACCCGCCATCTTAGCCCTGGAGGCCTAACGGATGGTGGAGCTCAATCCTTCATGTTCTGGTAAAACTGATTGCTAGCTAGTGTGTCTTGGTGGTCATGTGACTGTGATTGACAGTGGCCCTTTCAAGTTCTCTTTCCATCTTTGTTTCATCAGTTTGTCCTTCTAGTTTTTTGAGTTGAATTTTGAATTCTCCGGTTGTTATTCTCTATCAGTCTGTTTGTAGTCTTACTTTATCTGGTTGGGTTCTGTTGTGTCTGTTTAGTGGTGGTTGTTTTATGTATGTCAGTGTTTTTCAGCTCGATATTTATGTATTTCTTTTAAAATGACTTCAAATGGTTATCGTTCTCGATCAGACTCATCAACCAAAGTTAATTCAATGTACTGCAACAATCTGATAAAAACTAAGAAATGTTTTACAATAATTTATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATGGCAGTTATGAGTCAAGTGAATCACTGAATCAGTATTTTGAACTGCTTCATTGAAACAAAGTGTTATGCAAAATGATTCACAGAAATTACAAAATTTATTGGAGGTTCTGGCAAATGAATAATTGAATCTGTCTTTTAAAACCAATTCATTGAAACTATCAGCTCAAAAAAAAAAAAAAAAAAAAAAATCTTGAATCAGATTTCCCAACTCTAGTAGGATCTTTTTCTACAAAATAACCACAAGAAAAATGA

Function

symbol description
scn2b Predicted to enable sodium channel regulator activity. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in brain; eye; gill; heart; and liver. Human ortholog(s) of this gene implicated in familial atrial fibrillation. Orthologous to human SCN2B (sodium voltage-gated channel beta subunit 2).

GO:

id name namespace
GO:0006810 transport biological_process

KEGG:

id description
K04846 SCN2B; voltage-gated sodium channel type II beta

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_00657092_00659557.mRNA True 1680 mRNA 0.35 3 656991 660488

Neighbor

gene id symbol gene type direction distance location
CI01000308_00640975_00648455 NA coding upstream 7850 640908 ~ 649141 (+)
CI01000308_00435833_00465809 NA coding upstream 190945 435553 ~ 466046 (+)
CI01000308_00363344_00367355 NA coding upstream 289373 363004 ~ 367618 (+)
CI01000308_00079714_00086440 NA coding upstream 569574 79608 ~ 87417 (+)
CI01000308_00063094_00067540 NA coding upstream 589365 62924 ~ 67626 (+)
CI01000308_00695140_00699646 SCN4B, SCN4BA coding downstream 34652 695140 ~ 699901 (+)
CI01000308_00770560_00784179 NA coding downstream 109784 770272 ~ 785796 (+)
CI01000308_00836074_00942387 DSCAML1 coding downstream 175586 836074 ~ 942387 (+)
CI01000308_00983925_00991307 NA coding downstream 323437 983925 ~ 991389 (+)
CI01000308_01003736_01006059 NA coding downstream 343248 1003736 ~ 1007117 (+)
G437831 NA non-coding upstream 122460 534330 ~ 534531 (+)
G437827 NA non-coding upstream 128534 528194 ~ 528457 (+)
G437814 NA non-coding upstream 162236 494497 ~ 494755 (+)
G437788 NA non-coding upstream 172600 483599 ~ 484391 (+)
G437509 NA non-coding upstream 393118 177546 ~ 263873 (+)
G437906 NA non-coding downstream 78019 738507 ~ 741264 (+)
G437905 NA non-coding downstream 93209 753697 ~ 755961 (+)
G437917 NA non-coding downstream 125476 785964 ~ 821603 (+)
G437929 NA non-coding downstream 135974 796462 ~ 796886 (+)
G437938 NA non-coding downstream 161901 822389 ~ 822661 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location