CI01000308_00770560_00784179


Basic Information

Item Value
gene id CI01000308_00770560_00784179
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000308
NCBI id null
chromosome length 1982671
location 770272 ~ 785796 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000308_00770560_00784179.mRNA
CTATAAATAAAAACAACAAAATGTGATTTTGGTTACAAATATGACTGGTGGTTGCATGGATAAGGCACTTGTATTCATTAACCCATTAGGCAGGCAATAAACAAAACTCACCTTCCTGGCTCTGAGCTGTGGTATGCAAAGTATTAGCTAAATGGTGTTGACTCATGTAACACTTGTGGAAAAATTACATGAATACAACGTGAATTTAATACACATTTAAAGCCCAGAATGCATGGCCCACCTGTCTAATCTTGGCAGTGTGTGAAACATGCTCACACTTTTGGTGACATGGTGGGTGTAAACAGACACGTTTATTGTTATTTGGTGTTGCATTGCAAACACTACACACCTACTCACTGGATTGAAGAGAAGGACCCTCCTCCACCATACTACTCTGTGGCAGTGGACCCACAGACCCCTCCTATGACCTACGAGGAGGTGATTTATGAGGACAAATATGGGGTCACACAGAAAACTGTGCCATACTATGTTCAGAAGGATCCGGCTCAAGTACAGGTAGCAGCCGTCATCGTCACACAGCGAGTTGTCCCTCCTCCAAAAAGTCCGGAGTCTTGTGGACGGAGTGCCAAGTGTTGGGGTGGATGGGTAGGTGTGCTGTTGCTGTTGGCTCTCATTGGACTGGCCATCTGGCTTGGAGGTAAGGGAGGGGATGTATCTGTAATGACAGGACACACCATTTATGCTTACCTTGTACCTAAACCTCTCACCTCGATTTTTCTCTTTACCGCTCTCTCACTTATGGGGATAGTGCATTATGGATCCAGGTCAAATTCCGGCCATTACGAGAGCGATTGCAAGGGAAAAGATTGCGAGCAACAAGACAGCCACGAGAAGCATGACGACATGAAGGAGTCTGACACCTGCTCCAACTCCTCTGTGCAATGTGACGGCATCCAAAACTGCCAACAGGCCAGCGATGAGACAAACTGCGTGAGATTTGGTGAAGGTGGAGTGTTGCAGGTCAGAACTCAGGATGGACCATTTCTTCCCGTGTGTTATCAGGGCATGGATAAGAGTTATGCTGACCAGATCTGTGAACAACTGGGCTTTAGAGGGTCTTATGCATCAAGTCCAGTGGATAGCAAGATGTCCGTAGCCCTTACTGTAGAACCTAGATCAGACAAACTTATACAGGGTCTGGTCAATGTCAGCACTGGCTGTTTGAATGAGAAAACAGTCTCACTTGAATGCACAGACTGTGGCAAGCAGCAAAGTGCCTCCAGGATCATAGGGGGCACCGCCTCTCAGCTTGGCCAGTGGCCTTGGCAGGTTAGCCTGCATTTCAATAGAGGCCATGTTTGTGGTGGATCACTCATCTCTCCGGACTTTGTTGTGTCAGCTGCCCATTGCTTCCAAAGCTCAATGGCGAATTCTGGAAATTGGCGTGTTTATTTTGGAACTATTTCCCAGAATACCTTTCAGATCCCCTACTATGTGAAGAAGATCATGGTAAATGAGAAGTACAACAGTGTCAGCAATGATTTTGACGTCGCCTTACTGAAACTCGCCAGTCCTGTGACTTTCTCCAGTACCATACAGCCAGTTTGCCTTCCTACATTTGACCAGACCTTTTCTGATGGATTAGAGTGCCGGACATCTGGCTTTGGGACAACACAACAGGGAGCAGACCATGCCTCTACAAGCCTCATGGATGTGGCAGTGAATGTCATTGACACACGAGTGTGTAACAGCAGTCAGGTGTACCGTGGGGCCATCACTAAGAATATGATGTGTGCCGGCGATATGAATGGAGGCCGGGACTCCTGTCAGGGGGATAGTGGAGGTCCACTGGTGTGCAAGGGAAATAATGAACGCTGGTATCTGGCTGGAATTACAAGTTGGGGAGCAGGTTGTGGACAGAGACAAAAACCAGGAGTATATAGCAGAGTGACCAGCCTTCTGCCCTGGATCTACAGCAAGATGCAGAATTTGAACAACGACAATGGACACAGGACAAAAGATGAAGGACAGAGTAATGCACTTTGACATGGGACAATGTTGCAATATTGTAGCCACAATTGGACAAAGAAAAACACTATTGATTCCACGTTCTCCTACAAGAAACTAATAATACAACTCAACCTGGGAAAGCAGAGCTGCAGGCGTTGAGGCCCATGCAGTGCTTGTTGCTATGCTTTCCTCATTCTTTTCTTTGCATTTACACTGTAAGTTCACAGCACACTGCTGAATCTGAGCCTTTGTTGCCTCTTTAACTCTGTATCCTTGCACTGATTCTACAGAAATATTGGGAGTGTTCTGCAAATATATATTTATTAACCAAAAGGGTGTTAAAATGTGATTATATTGTTTTATCCTGTGTGAAGGGTCCGTCCTTTTTCTCTATGATTTATATTGTTTCTTTATAAATCATGCCAAAAGCATATACAGTTAGAGCTTTATTCTTCAAGCGTGACACAGTTAAAAGAGTGCTATAAGGTCTAAGTAGATCAACATTTATGGATAGTTCACCCAAAAATGAAAATTCCATCATCATTTGCACCCTCATGTTGTTTCTTTCTTCTGTTGAACACGGCTGGCCATTGACTTCCATAGTAGGAAAAATAAAATATATGGAAGTCTACTGTCAACTGTTTGATTACCAACATTCTTCAAAATTTCTTTTGTGTTCAACAGAAGAAAGAAATTCATACACGTTTGGAACAACTTGAGTAAATGATGACAGAATTGTCATTTTTGGGTGAACTATCCCTTTAACATTTGCCAACCATTTTAGGATATGCTAAATGACTTATAAAGTAACATCCAGTGGAGCAAACTACTCCACTTTTTTGTCAAATTTAGCTGTTTTGAATTGAAACTATAACATTTAAGTGATTCATAATTCAAGACAAGTCTTGTCTCGATTCAAAATTCGAGACAAGAAACCTTACCGTGGTTTTCAGCACATTAAGCATAAGATTACAACTGAATGTGTGTACATTATGAATGGATTTAATGAACCCTTGAAATACCTTTTTCAATACCTTTTTTGTAGCCAAGATGTGTCTGACTTTCAAAAATAAATCCACGTTGAGAGGACAATGTTATTGCAGAATCCATTTTCTTCCTGATGTTTCTCCTAAAACACCTTATTTTAAAAAAAAAAAAAGGAAAAAAAGTTAATATACTGTATACAGTATTTCCAAAACAGGTATGAACTAAATGTGGATAGCATAACTAAGATGTTTTGGTCTTGGAAGAATTTAATGATAATGTTTGCCTTCATACACTCTTAAAAATAAAGGTTCCAAAATGGAGTTTTCACAGCAATGCCATAGAAGAACCATTTTGGGTTCCACAGAACCATTCACTGTTCTTAAAAGAACATGTTTTCTTAATGTGAATAAAATTGCAACAATTGAAGGGTTCTATGAATGGTAAATGTTCTTCATGGTTTAAATAAACGAGCTTGATTTTTAAGAGTGTACTGAAATATCTGACTTTTGATTGTCTTTGGTATCCATCCAAATGTAAGCACAGTCTGAGACATTGTTGAGAAATCATCTGAATGTGAGTCTTTTTCTCAAGAAAATCATCTGAGAAGCAGAAGAGTTCGATTTGACTTCCATTTAAACTCCGTTTACAAGAAACAACATAGGCCTA

Function

NR:

description
Wu:fk84e06 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000308_00770560_00784179.mRNA True 3624 mRNA 0.41 12 770272 785796

Neighbor

gene id symbol gene type direction distance location
CI01000308_00695140_00699646 SCN4B, SCN4BA coding upstream 70371 695140 ~ 699901 (+)
CI01000308_00657092_00659557 SCN2B coding upstream 109784 656991 ~ 660488 (+)
CI01000308_00640975_00648455 NA coding upstream 121131 640908 ~ 649141 (+)
CI01000308_00435833_00465809 NA coding upstream 304226 435553 ~ 466046 (+)
CI01000308_00363344_00367355 NA coding upstream 402654 363004 ~ 367618 (+)
CI01000308_00836074_00942387 DSCAML1 coding downstream 50278 836074 ~ 942387 (+)
CI01000308_00983925_00991307 NA coding downstream 198129 983925 ~ 991389 (+)
CI01000308_01003736_01006059 NA coding downstream 217940 1003736 ~ 1007117 (+)
CI01000308_01132580_01134190 FKRP coding downstream 346229 1132025 ~ 1134414 (+)
CI01000308_01594565_01626825 CADM2, CADM2B coding downstream 808769 1594565 ~ 1626825 (+)
G437905 NA non-coding upstream 14311 753697 ~ 755961 (+)
G437906 NA non-coding upstream 29008 738507 ~ 741264 (+)
G437831 NA non-coding upstream 235741 534330 ~ 534531 (+)
G437827 NA non-coding upstream 241815 528194 ~ 528457 (+)
G437814 NA non-coding upstream 275517 494497 ~ 494755 (+)
G437917 NA non-coding downstream 168 785964 ~ 821603 (+)
G437929 NA non-coding downstream 10666 796462 ~ 796886 (+)
G437938 NA non-coding downstream 36593 822389 ~ 822661 (+)
G437939 NA non-coding downstream 36928 822724 ~ 823150 (+)
G437941 NA non-coding downstream 46096 831892 ~ 832153 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009056 tmprss13a coding NC_007126.7 CM002899.2 12326161 ~ 12360409 (-)