XLOC_012857 (dusp22a)


Basic Information

Item Value
gene id XLOC_012857
gene name dusp22a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 30511230 ~ 30564688 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025658
TCGGCAGAATTCCGGAAGCTGTCACACCGACTGTTTTCTTCTGTGAGCTTACTGAATATAATTAGACTTTTACTATTGAACGCAGTCGTTTTCGAGCCGCATGTCGATTCTCTGATGCAATGAACATTCTGAGGTCTGTTTGCACGTAAACTTAACAGTCGTTCCTGACAAATAACCATGGGGAATGGAATGAATAAGGTCATTGATGGTCTCTATCTAGGAAATATAAGAGATTCAGAGAACAGAGACAGTCTGTCCCGCAATGGCATCACCCATATCCTCTCCGTCTGCAACAATGCAAAGCCTGTGTTAGAGGATATGACCTATCTGTGCATTAATGCAGCTGATGCCTCCAGTCAAAACTTATCTCAACACTTCAAAGAATCCATACGCTTTATCCATGAGTGTCGACTTAATGGAGGGGCATGTCTAGTTCATTGTCTTGCTGGAGTGTCTCGGAGTACCACTGTGGTGGTGGCTTACCTCATGACAGTCACCAGCTATGGCTGGCAAGAGTGTCTTACTGCGGTGAAGGCTGTGCGCTCTTTTGTGGGCCCAAACTATGGCTTCCAGCAGCAGCTGCAGGAGTTTCAGATGAAACAGGTGTCAgagtATCAGGCATGGTTGCGGGCCAGCTATAGATCCAGCCCATTTAAAGACCAGGAACAGGTTGAAGCTTTACTGAGTCTGTTTGCAGAACAGCAGCAACAAGGACAACAAAATGATCCGGAGTGGATGAGCCAGGGCTCTCGCATCTATCCTCTGTCCTACAACCAATACAGTGCCTCGGGCAGCAACAGGTGAAAGCAGACTTGACCAGGTCTCCGCTGCCCACCAGATTTACACCCTGAAAGGACTAAAAGAGCATGTGTGGCAATTCCCACATGTGCAGATCATTTCAAAAGAGAGATCATAGAACACTTTAGATTACAGTCATGCTGATGTGAGCATTATGAAAACGGTAATAGCGAGTTCATTAACCATTGATCACTCAAAGAGTATTTTTTCCTTTATAAGTTGTTGGAATCTGATAGAGTTAGTCGCCAgcattgctgtatttttaaaaaaacgcaTCCCCCACTGCTCTACCTCCAAAATGATAAGGATGCCTTTAGATCTTTTAGTTGTCCGACATTAGATTGATAATAGATCAGTGCTAAAATGCTCTAAGCGcataaattgctttataaaatgcagtatttggaCCGCTAATGTGTAATTTATGCTTTgtatttcatatactgtatattgtactGTTGGTCTCTCTTGGCATAAAACGTGGcaataaagtaataaaacaatttaaaa

Function

symbol description
dusp22a Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to be involved in positive regulation of JNK cascade; regulation of cell population proliferation; and transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human DUSP22 (dual specificity phosphatase 22).

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0042127 regulation of cell population proliferation biological_process
GO:0046330 positive regulation of JNK cascade biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0016311 dephosphorylation biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008138 protein tyrosine/serine/threonine phosphatase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016791 phosphatase activity molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-219 Predicted to enable protein tyrosine phosphatase activity and protein tyrosine/serine/threonine phosphatase activity. Predicted to be involved in positive regulation of JNK cascade; regulation of cell population proliferation; and transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in cytoplasm and nucleus. Predicted to be active in cytosol. Orthologous to human DUSP22 (dual specificity phosphatase 22).

Ensembl:

ensembl_id ENSDARG00000056396

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025658 True 1308 mRNA 0.43 7 30511230 30564688

Neighbor

gene id symbol gene type direction distance location
XLOC_012856 cox4i1 coding upstream 989 30507839 ~ 30510241 (+)
XLOC_012855 gse1 coding upstream 30403 30157034 ~ 30480827 (+)
XLOC_012854 NA coding upstream 379399 30129771 ~ 30131831 (+)
XLOC_012853 si:ch211-220f16.1 coding upstream 480281 30028135 ~ 30030949 (+)
XLOC_012852 atmin coding upstream 555839 29950233 ~ 29955391 (+)
XLOC_012858 irf8 coding downstream 3257 30567945 ~ 30573849 (+)
XLOC_012859 foxf1 coding downstream 282549 30847237 ~ 30850365 (+)
XLOC_012860 mthfsd coding downstream 313508 30878196 ~ 30952282 (+)
XLOC_012861 cd151l coding downstream 433784 30998472 ~ 31023447 (+)
XLOC_012862 mvda coding downstream 491957 31056645 ~ 31068755 (+)
XLOC_012849 CT025546.2 non-coding upstream 1336022 29175093 ~ 29175208 (+)
XLOC_012845 CR769777.2 non-coding upstream 2206913 28303891 ~ 28304317 (+)
XLOC_012841 BX649600.1 non-coding upstream 2774390 27736724 ~ 27736840 (+)
XLOC_012835 BX640463.2 non-coding upstream 3314904 27196210 ~ 27196326 (+)
XLOC_012863 NA non-coding downstream 508555 31073243 ~ 31075619 (+)
XLOC_012865 NA non-coding downstream 716162 31280850 ~ 31459487 (+)
XLOC_012866 NA non-coding downstream 954890 31519578 ~ 31521691 (+)
XLOC_012868 BX908763.1 non-coding downstream 1280816 31845504 ~ 31846556 (+)
XLOC_012869 NA non-coding downstream 1307333 31872021 ~ 31872676 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000150_01586578_01624727 DS22A, DUSP22A misc CI01000150 null 1586445 ~ 1625034 (+)